FC877890

Overview
NameFC877890
Unique NameFC877890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877890_ssr641 microsatellite FC877890_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:26..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_SCLS1 (Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 68/218 (31.19%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP---------AETFIDKPXXXXXXXXXXGVTKGTYVPPGMR----AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P+     +++G + ++ ++FNDDG KVK     R  K+    ++ R  ER++W KFG + ++  G      S  E ++ RP     K  + + + D+ A   K     + CR C   G+H+T++CPFK   AP         A    D P          G  K +YVPP +R    AG ER G     R+D  ++RVTN+SE   E +L ++F  FG
Sbjct:   23 PQSTTTTNKDGTQTIVTWRFNDDGKKVKTTRRIRFTKVKEI-VNPRVAERKSWGKFGLSQKDAAGPASDTTSVGENIIFRPSTNWRKDAKEEVS-DAGAMKNKLKDKQVKCRICS--GEHFTAKCPFKGTMAPLGEEGAVDVAAGHADTPEGPGGL----GAGKSSYVPPHLRNGGAAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFG 232          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_BOTFB (Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 68/218 (31.19%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP---------AETFIDKPXXXXXXXXXXGVTKGTYVPPGMR----AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P+     +++G + ++ ++FNDDG KVK     R  K+    ++ R  ER++W KFG + ++  G      S  E ++ RP     K  + + + D+ A   K     + CR C   G+H+T++CPFK   AP         A    D P          G  K +YVPP +R    AG ER G     R+D  ++RVTN+SE   E +L ++F  FG
Sbjct:   23 PQSTTTTNKDGTQTIVTWRFNDDGKKVKTTRRIRFTKVKEI-VNPRVAERKSWGKFGLSQKDAAGPASDTTSVGENIIFRPSTNWRKDAKEEVS-DAGAMKNKLKDKQVKCRICS--GEHFTAKCPFKGTMAPLGEEGAVDVAAGHADTPEGPGGL----GAGKSSYVPPHLRNGGTAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFG 232          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFU (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 69/216 (31.94%), Postives = 102/216 (47.22%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP----AETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    R   ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP    A    +            G    +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   24 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWRVQAAEAEKAGPEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVDETAAAGAEPGADDVPAAGGLGAGTSSYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFG 234          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif35 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 69/216 (31.94%), Postives = 102/216 (47.22%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP----AETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    R   ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP    A    +            G    +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   24 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWRVQAAEAEKAGPEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVDETAAAGAEPGADDVPAAGGLGAGTSSYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFG 234          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_AEDAE (Eukaryotic translation initiation factor 3 subunit G OS=Aedes aegypti GN=eIF3-S4-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 76/212 (35.85%), Postives = 108/212 (50.94%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKA--AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAE-RTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP ++I   ENG K V EYK+N D  KVK+    ++ +L    + K    R+NW+KFGD+  +  G   + TMVS E++ ++      +K EE K+  A DSL  + K       CR C  +G+HW+  CP+K  A  A     KP             K G YVPP MR   +   G + R R+D  ++R++NLSE   E DL EL +  G
Sbjct:   24 PPTEII---ENGQKIVTEYKYNKDDKKVKVVRTYKITRLV---VPKSIAMRKNWSKFGDSSNDKPGPNPQTTMVS-EDVYMQ---FVSNKEEEQKSDNALDSLKNIAK-------CRIC--EGEHWSLSCPYKGTAYEAGK--AKPVVPVQQEMAPTTAKSGKYVPPSMRDSQKPGMGGNPRGRDDTTAIRISNLSEAMTEADLEELVKKIG 214          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROVI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila virilis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 68/199 (34.17%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFGD+  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPSKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKAAAAASAAVDAPKSGKYVPPFLK-DSQKGGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_USTMA (Eukaryotic translation initiation factor 3 subunit G OS=Ustilago maydis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 73/213 (34.27%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  227 NGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKD-LAAPAETFIDKP-----------XXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDM-----RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            NGVK VIEY+ N DG K+KI    + R L   +++    ER+ W KFG    +  G      +  E ++ +  A     E      D + Q      +  VCR C  KGDH+T++CP+KD L A      D P                         G YVPP MR GA+  G  M       R+D  ++RVTNLSED  + DL ELF  FG
Sbjct:   42 NGVKVVIEYRTNPDGKKIKITRRVK-RTLVKTKVNHEVAERKTWTKFGQEKGKAAGPHSATTTIGENVVLKMSAGNKTAEPEVDDMDKMRQQLANKRI--VCRLC--KGDHFTTKCPYKDTLEAIPGAGADTPEGGDGSMTPLAGMDPTNPAVAASAGGKYVPPSMRGGAKGPGEKMGGLGGMSRDDLPTLRVTNLSEDADDDDLRELFMRFG 249          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROSI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila simulans GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 70/199 (35.18%), Postives = 102/199 (51.26%), Query Frame = 2
Query:  236 KKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            K V EYKFNDDG KVK+    R  K+    + K    RRNW KFGD+  +  G +  T +++EEIL++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ G   +G+      R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   32 KYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEILMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTMMETKANAAAAAAISDPSKTGKYVPPFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIG 217          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROSE (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila sechellia GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20
Identity = 70/199 (35.18%), Postives = 102/199 (51.26%), Query Frame = 2
Query:  236 KKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            K V EYKFNDDG KVK+    R  K+    + K    RRNW KFGD+  +  G +  T +++EEIL++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ G   +G+      R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   32 KYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEILMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTVMETKANAAAAAAISDPSKTGKYVPPFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIG 217          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROMO (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila mojavensis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20
Identity = 68/199 (34.17%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFGD+  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKAAAAASAAVDAPKSGKYVPPFLK-DSQKGGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
The following BLAST results are available for this feature:
BLAST of FC877890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EIF3G_SCLS12.602e-2031.19Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOTFB2.602e-2031.19Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFU2.602e-2031.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFC2.602e-2031.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_AEDAE2.602e-2035.85Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROVI2.602e-2034.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_USTMA3.399e-2034.27Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROSI3.399e-2035.18Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROSE4.439e-2035.18Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROMO4.439e-2034.17Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YO06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877890 ID=FC877890; Name=FC877890; organism=Citrus clementina; type=EST; length=819bp
ATCTTTTTTAACTTTCACAAAAAATCGAAATCGCAAACCCTAAAACGCTT
TGTCTCGCATCCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCG
AAAAAGATGTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTG
GAGCGAACTGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGC
CTAAACAAGTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAA
TACAAGTTTAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCG
CGTGCGCAAGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGA
GAAACTGGGCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGA
CTTACCATGGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCC
TGGTAGCAAACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTG
CTGGCGTGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCG
GAGAGAACTGGAACCGATATGAGACGCAGGAATGATGAGAACTCTGTTAG
GGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCT
TCCGACCTTTTGGTGCTGT
back to top