FC877896

Overview
NameFC877896
Unique NameFC877896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10472 contig Ccv1_Contig10472:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_NEUCR (Branchpoint-bridging protein OS=Neurospora crassa GN=bpb-1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 45/129 (34.88%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLN---EPLHILVEAELPVEIVDARLMQAREILEDLLK---PVDESHDFYKKQQLRELAMLNGTLREE 894
            +V +PV  YP  NF+G L+GPRGN+LK++E  +  ++ IRG+GS+K+       +G+    H +   E LH L+ A+      + ++ +A++++ ++++    + E  +  K+ QLRELA LNGTLR++
Sbjct:  199 KVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEG------KGRSDAAHSSNQEEDLHCLIMAD-----TEEKVNKAKKLIHNIIETAASIPEGQNELKRNQLRELAALNGTLRDD 316          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_YARLI (Branchpoint-bridging protein OS=Yarrowia lipolytica GN=BBP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.358e-15
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  529 VDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD-PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE----GSPMS 909
            V IPV +YP+ NF+G+LLG RG +LK++E  +  ++ IRGRGS+K    R ++    P      + LH L+ +E   +I  AR +Q  + + D    V E  +  K+ QLRELA LNGTLR++    G+P S
Sbjct:  183 VYIPVNEYPDINFIGQLLGARGKTLKKMEQESGAKICIRGRGSVKQGKGRTDI----PFQSTAEDDLHCLIISEDEEKI--ARAVQLVQQVIDTAASVPEGQNELKRSQLRELAALNGTLRDDENYGGAPQS 308          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_DEBHA (Branchpoint-bridging protein OS=Debaryomyces hansenii GN=BBP PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 50/139 (35.97%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIK-----------DPAREEMMRGKPGYEHL-NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            VK   ++ IPV+ YP+ NFVG LLGPRGN+L++++  +  R+ IRG+GS+K           D +   +    P      N+ LH+++ ++   +I  A  +  + I + +  PV ++    K+ QLRELA+LNGTLRE
Sbjct:  160 VKTYEKIYIPVKDYPDINFVGLLLGPRGNTLRQLQEDSGARLAIRGKGSVKDGKSTSSNNDDDDSNSSLSFSNPNLNSSGNDDLHVVITSDSQSKIAKAIKLTNQVIEKAISSPVGQND--LKRGQLRELAILNGTLRE 296          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.159e-15
Identity = 47/127 (37.01%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYE-HLNEPLHILVEAELPVEIVDARLMQAREILEDLLK---PVDESHDFYKKQQLRELAMLNGTLREE 894
            +V +PV+ YP  NF+G L+GPRG++LK +EA +  ++ IRG+GS+K    E   R  P    ++ E LH LV A+      + ++  A ++++++++    V E  +  K+ QLR+LA LNGTLR++
Sbjct:  189 KVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVK----EGKGRSDPSVRGNMEEDLHCLVTAD-----SEDKINHAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDD 306          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_CRYNE (Branchpoint-bridging protein OS=Cryptococcus neoformans GN=BBP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGY--EHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE 894
            +V IPV+++P  NF G L+GPRGNSLK++E  +  ++ IRG+GS+K+       +G+ G   +   + LH L+ A+     V   +    +++E      +  +D +K+ QLRELA LNGTLR++
Sbjct:  249 KVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKEG------KGRAGNFPQDEEDELHCLITAD-DESKVKTCVALINKVIETAASTPEGEND-HKRNQLRELASLNGTLRDD 365          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_USTMA (Branchpoint-bridging protein OS=Ustilago maydis GN=BBP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.829e-13
Identity = 42/125 (33.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  520 TIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE 894
            T +V +P++++P   F G L+GPRGN+LK +E  +  ++ IRG+GS+K        +GK   +   E +H +V A+    +    +    +++E      +  +D +K+ QLRELA LNGTLR++
Sbjct:  249 TEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTG------KGKMDADEDEEEMHCVVTADDEASVKKC-IKLINQVIETAASTPEGEND-HKRNQLRELAALNGTLRDD 365          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHI-LVEAELPVEIVDARLMQAREILEDLLKPVDE 825
            VK   R  +PV+++P +NF+G+LLGP G+++K+++  T  ++ I GRGS++D  +EE +R  G   Y HLNE LHI ++    P E   AR+  A   ++  + P ++
Sbjct:   72 VKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAE-AHARMAYALTEIKKYITPEED 178          
The following BLAST results are available for this feature:
BLAST of FC877896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
BBP_NEUCR7.959e-1634.88Branchpoint-bridging protein OS=Neurospora crassa ... [more]
BBP_YARLI1.358e-1540.15Branchpoint-bridging protein OS=Yarrowia lipolytic... [more]
BBP_DEBHA1.773e-1535.97Branchpoint-bridging protein OS=Debaryomyces hanse... [more]
BBP_SCHPO5.159e-1537.01Branchpoint-bridging protein OS=Schizosaccharomyce... [more]
BBP_CRYNE9.729e-1436.80Branchpoint-bridging protein OS=Cryptococcus neofo... [more]
BBP_USTMA4.829e-1333.60Branchpoint-bridging protein OS=Ustilago maydis GN... [more]
GRP33_ARTSA1.405e-1237.04Glycine-rich protein GRP33 OS=Artemia salina PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO07RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877896 ID=FC877896; Name=FC877896; organism=Citrus clementina; type=EST; length=923bp
CTACGGTAGGCAGCCACTAGTTAGATTAGCGAGTGTGTGTCTGGTCGGGA
TCATCCCACCAGCTACACAAATCTGCAGACAGCCGAACGCCACCTTCGTC
ATCATCAATCATCGCAATCTTCCGTCCGCCGTACGCTTCTCATCGCCGAT
CGTACCGCTGAAGCCACCGCCTGGATCTGATAAAGTGACCCGACGGCGAC
GACCGTAGACACTAACAGCAGAAAACTAACTTAACGATGGCGTCATCAGG
TGGAGGCAGGTTCATGGCCTACTCGCTGTCACCTTCTGCTCCTCACTCTC
CTCACCTCCCCTCTCTCCGCTCCGCATCCTCCGCTATCCTCGATCAAGAA
AAATATCTCTCTGAGTTACTAGCTGAGCGTCATAAGCTTAATCCATTCCT
GCCTGTGTTACCGAATGCTTACCGGCTGTTGAACCAGGATTTCTGGTTTA
ATGCAGTCATCATCAGCACAAAACTGGCTTAGCTCACAAGGTAGCTCATC
AGGTCTCATTGTTAAGAGGACAATCAGAGTGGATATTCCAGTCGAAAAAT
ATCCTAATTTCAACTTTGTCGGGCGCCTCCTTGGTCCTCGAGGCAACTCG
CTTAAGCGAGTCGAAGCTAGTACAGAATGCCGTGTTCTGATTAGGGGACG
CGGCAGTATAAAGGATCCAGCAAGGGAAGAAATGATGAGAGGAAAACCTG
GGTATGAACATTTGAATGAGCCTCTCCATATCCTGGTTGAGGCAGAATTG
CCAGTTGAGATAGTTGATGCTCGCCTAATGCAAGCACGTGAGATACTTGA
AGATTTGCTCAAGCCTGTGGATGAATCCCATGATTTCTACAAGAAACAAC
AACTGCGAGAGCTTGCAATGCTCAATGGTACACTTCGTGAAGAAGGGTCT
CCAATGTCTGGGTTAGTGTCCCC
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