FC877900

Overview
NameFC877900
Unique NameFC877900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11681 contig Ccv1_Contig11681:165..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.011e-38
Identity = 83/129 (64.34%), Postives = 103/129 (79.84%), Query Frame = 1
Query:   82 GGS--HESGGEQSPHAG-GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME--GDTKGSARGGDGSA 453
            GGS  + SGG  + +   G REQDRYLPIANI RIMKKALP N K+AKDAK+TVQ+CVSEFISFITSEASDKCQ+EKRKTING+D++ AM +LGFE+Y++PLK YL++YRE E   + K S +  + S+
Sbjct:   27 GGSSNNNSGGNANNNNNEGDREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNKRSPKKSESSS 155          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.626e-38
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 1
Query:   49 SEMAEAPTSPAGGSH-ESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPL--NYVNPQAQGQHMIV 558
            S   +A  S A G H ES G + P+    REQD YLPIAN++RIMK ++P++GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE M+G+       G  +    T  A+P +  + +  GPL  + +    Q Q+++V
Sbjct:   29 SSDGDAEGSLASGDHDESCGSKDPY----REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK------GINATVVTTTDAIPEELTEESFSGPLATSIITADGQQQNVMV 192          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.341e-36
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   70 TSPAGGSHESGG-------EQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKG-SARGGDGSA 453
            +S +   HE  G       +Q   +  V+EQDR LPIAN+ RIMK  LPAN K++K+AK+T+QECVSEFISF+T EASDKC KEKRKT+NGDD+ WAMA LGF+DY   LK YL RYR +EG+      +GG  S+
Sbjct:   22 SSSSNHQHEHDGLVVVVEDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_CHICK (Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.081e-35
Identity = 79/145 (54.48%), Postives = 105/145 (72.41%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIV 558
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+   GDG ++  T  A       +  Q P   +    Q Q+++V
Sbjct:   51 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTVTTGDGLSEELTEEA-------FTNQLPAGLITTDGQQQNVMV 188          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.081e-35
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 1
Query:   97 SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALP-GQNAQYALQGPL 516
            +GGE+      VREQDR++PIAN+ RIM++ LPA+ KI+ D+K+T+QECVSE+ISFIT EA+++CQ+E+RKTI  +D+LWAM+ LGF+DYI+PL  YL RYRE+EG+   S   G  S     +   P G   +Y   GP+
Sbjct:   48 NGGEEECT---VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVKRPNGTMTEYGAYGPV 185          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_HORSE (Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.908e-35
Identity = 85/171 (49.71%), Postives = 114/171 (66.67%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGDTKGSARGGDGSAKRDTIGALPGQNAQYAL--QGPLNYVNPQAQGQHMIVPSMQGNE*VVSSFTVTYFMILGLLKL 636
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+       G G A   T G L  + A+ A   Q P   +    Q Q+++V            +T +Y  I G+ ++
Sbjct:   53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK------GIGGAVTATDG-LSEELAEEAFTNQLPAGLITADGQQQNVMV------------YTTSYHQISGVQQI 204          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.033e-34
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIV 558
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A       +  Q P   +    Q Q+++V
Sbjct:   53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSATDGLSEELTEEA-------FTNQLPAGLITADGQQQNVMV 190          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.033e-34
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIV 558
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A       +  Q P   +    Q Q+++V
Sbjct:   53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSATDGLSEELTEEA-------FTNQLPAGLITADGQQQNVMV 190          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_HUMAN (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.033e-34
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIV 558
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T  A       +  Q P   +    Q Q+++V
Sbjct:   53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEA-------FTNQLPAGLITTDGQQQNVMV 190          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NFYB_BOVIN (Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.033e-34
Identity = 77/145 (53.10%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIV 558
            REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+    G+    DG ++  T       +  +  Q P   +    Q Q+++V
Sbjct:   53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELT-------DEAFTNQLPAGLITADGQQQNVMV 190          
The following BLAST results are available for this feature:
BLAST of FC877900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB_DICDI2.011e-3864.34Nuclear transcription factor Y subunit beta OS=Dic... [more]
NFYB_PETMA2.626e-3850.57Nuclear transcription factor Y subunit beta OS=Pet... [more]
NFYB5_ARATH9.341e-3655.88Nuclear transcription factor Y subunit B-5 OS=Arab... [more]
NFYB_CHICK2.081e-3554.48Nuclear transcription factor Y subunit beta OS=Gal... [more]
NFYB6_ARATH2.081e-3551.77Nuclear transcription factor Y subunit B-6 OS=Arab... [more]
NFYB_HORSE7.908e-3549.71Nuclear transcription factor Y subunit beta OS=Equ... [more]
NFYB_RAT1.033e-3453.79Nuclear transcription factor Y subunit beta OS=Rat... [more]
NFYB_MOUSE1.033e-3453.79Nuclear transcription factor Y subunit beta OS=Mus... [more]
NFYB_HUMAN1.033e-3453.79Nuclear transcription factor Y subunit beta OS=Hom... [more]
NFYB_BOVIN1.033e-3453.10Nuclear transcription factor Y subunit beta OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877900 ID=FC877900; Name=FC877900; organism=Citrus clementina; type=EST; length=792bp
CTTCTCTTAACTCGCGCGCCAATACAAAAACTCTGGGGATTTTATTTTTC
GGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCCACGAGAGCG
GGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAGGACAGGTAT
TTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTTGCCTGCTAA
TGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAATGTGTCTCTG
AGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGTCAGAAGGAG
AAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAATGGCAACTCT
GGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTATGAGGTACA
GGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGGGATGGATCT
GCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGCACAGTATGC
TCTTCAGGGTCCACTCAACTATGTTAATCCCCAAGCACAGGGGCAGCATA
TGATCGTTCCATCCATGCAGGGAAATGAATAAGTGGTTTCTAGCTTCACT
GTCACATATTTTATGATTTTAGGGTTGCTCAAATTGTTTAGTTTCAACAC
CTATAGCATCTTTGATATTAACTTATCTGCTTGATCTGAAGTTCTATATT
TTTTTCAGATTTTTTTCCTTTTATGTTTGTTGTTGAGGGTGATGGTGGTT
CGGGATTTTTTTCCCTTCCCTTTTGTCTTCTACATGCCCTTA
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