FC877900

Overview
NameFC877900
Unique NameFC877900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 429
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 429
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 429
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   K KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + S
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 39/136 (28.68%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  133 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQ 540
            +E +  LP A +S+++K+ LP + K + + +D + EC  EFI  I+SEA+D C +E+++TI  + ++ A+  LGF DY   +     +++ +E  TK  +     +  + T   +  Q   +A        +P+AQ
Sbjct:    7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK-LEVSTKSKSSKKFENLGKPTEQLIREQQLLFAKARSAFQASPEAQ 141          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  136 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 390
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  136 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 390
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  136 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 390
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
BLAST of FC877900 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  136 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 390
            + D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ + ++ A+ +LGF  YI  +K  L
Sbjct:    8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 91          
The following BLAST results are available for this feature:
BLAST of FC877900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DPOE3_PONAB5.514e-1240.00DNA polymerase epsilon subunit 3 OS=Pongo abelii G... [more]
DPOE3_HUMAN5.514e-1240.00DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]
DPOE3_BOVIN5.514e-1240.00DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
NC2B_DICDI2.737e-1128.68Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_RAT7.963e-1138.82Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE7.963e-1138.82Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN7.963e-1138.82Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK7.963e-1138.82Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877900 ID=FC877900; Name=FC877900; organism=Citrus clementina; type=EST; length=792bp
CTTCTCTTAACTCGCGCGCCAATACAAAAACTCTGGGGATTTTATTTTTC
GGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCCACGAGAGCG
GGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAGGACAGGTAT
TTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTTGCCTGCTAA
TGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAATGTGTCTCTG
AGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGTCAGAAGGAG
AAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAATGGCAACTCT
GGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTATGAGGTACA
GGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGGGATGGATCT
GCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGCACAGTATGC
TCTTCAGGGTCCACTCAACTATGTTAATCCCCAAGCACAGGGGCAGCATA
TGATCGTTCCATCCATGCAGGGAAATGAATAAGTGGTTTCTAGCTTCACT
GTCACATATTTTATGATTTTAGGGTTGCTCAAATTGTTTAGTTTCAACAC
CTATAGCATCTTTGATATTAACTTATCTGCTTGATCTGAAGTTCTATATT
TTTTTCAGATTTTTTTCCTTTTATGTTTGTTGTTGAGGGTGATGGTGGTT
CGGGATTTTTTTCCCTTCCCTTTTGTCTTCTACATGCCCTTA
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