FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.687e-44 Identity = 70/163 (42.94%), Postives = 92/163 (56.44%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ--CCQRLYGQITLDGLFEVTG 908 LELNASD+RGI VVR+++KTFA PYKL+ILDEADSMTN AQ AL FC++CNYV +IIP + SRC++FRF PL RLKEI E V V S + ++ GD+R+ L +Q + IT + +++ TG Sbjct: 91 LELNASDDRGIDVVREQIKTFASSMFFFNTT-----VPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDS-KAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTG 247 HSP 2 Score: 81.2629 bits (199), Expect = 3.687e-44 Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 WVEKYRPK +DD++ ++ Q + + + LPHLLFYGPPGTGKTS I A AR+L+GD Sbjct: 26 WVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD 84
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_SULTO (Replication factor C small subunit OS=Sulfolobus tokodaii GN=rfcS PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 3.690e-44 Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGL 911 FLELNASDERGI V+R+KVK FA RT G P+K+V+LDEAD+MT AQ AL F L CNY+S+II PI SR + FRF PL +E+V+ RL I +E V+ LE D GD+R+A+ +Q +YG++T++ +++V GL Sbjct: 73 FLELNASDERGIDVIRNKVKEFA-----RTVAGGNV--PFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQ-KALETIYDITQGDMRKAINILQ-ASSVYGKVTVEAVYKVLGL 226 HSP 2 Score: 75.8702 bits (185), Expect = 3.690e-44 Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRP+++DDIV+Q ++V+ L+ + ++PHLLF GPPGTGKT+A LA L+GD Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD 67
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_SULSO (Replication factor C small subunit OS=Sulfolobus solfataricus GN=rfcS PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.387e-43 Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGL 911 FLELNASDERGI V+R+KVK FA+ + P +K+V+LDEAD+MT AQ AL F L CNY+S+II PI SR + FRF PL +E+V+ RL I +E + LE D GD+R+++ +Q YG+I+++ +F+V GL Sbjct: 74 FLELNASDERGIDVIRNKVKEFARTVIPGDIP-------FKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQ-KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGL 227 HSP 2 Score: 78.5666 bits (192), Expect = 1.387e-43 Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPKT+DDIV+Q E++ L++ + ++PHLLF GPPGTGKT+A LA L+GD Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 3.067e-43 Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 LELNASD+RGI ++R + +FA + +KLVILDEAD+MT AQ AL FCLICNY+S+IIP + SRC++FRF PL+ E ++ RL+ + E VD+ S ++ V GD+RRAL +Q +G++T + ++ TG Sbjct: 88 LELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI-SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG 240 HSP 2 Score: 77.7962 bits (190), Expect = 3.067e-43 Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 2 Query: 146 LKTGKISNNEKPASSVXXXXXXXXXXXXWVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRVFGA 433 ++T + E+PA++ WVEKYRP+T++D++ +++ +++ + LPHLL YGPPGTGKTS ILA A+QL+ +D+ FG+ Sbjct: 1 METSALKQQEQPAAT-------KIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY----KDKEFGS 85
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.997e-43 Identity = 67/161 (41.61%), Postives = 95/161 (59.01%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 LELNASD+RGI +VR + +FA + +KLVILDEAD+MT AQ AL FCLICNY+S+IIP + SRC++FRF PL+ E ++ RL+ + E VD+ S ++ V GD+RRAL +Q +G++T + ++ TG Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI-SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG 239 HSP 2 Score: 76.2554 bits (186), Expect = 3.997e-43 Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRVFGA 433 WVEKYRP+T+ D++ +++ +++ ++ LPHLL YGPPGTGKTS ILA A+QL+ +D+ FG+ Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY----KDKEFGS 84
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_NANEQ (Replication factor C small subunit OS=Nanoarchaeum equitans GN=rfcS PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.503e-42 Identity = 68/164 (41.46%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDV-GSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGL 911 FLELNASDERGI V+R KVK FA R +P G P+K+V LDEAD++T AQ AL F L CNY S+II PI SR + F+FKPL +E + + I EG+ + ++ D GDLR+A+ +Q + IT+D L+E+ + Sbjct: 68 FLELNASDERGIDVIRHKVKEFA-----RAKPIGDV--PFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASI 224 HSP 2 Score: 79.337 bits (194), Expect = 1.503e-42 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRPK IDDI++Q E+ + L+ + ++PHLLF GPPGTGKT+A LA A +L+GD R+ Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDAWRE 66
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PICTO (Replication factor C small subunit OS=Picrophilus torridus GN=rfcS PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.503e-42 Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 FLELNASDERGI ++R+ +K FA++ RP + +K++ LDEAD +TN AQAAL F CNY S+IIPPI SRC RF+PL +E + ++L+EI +E D+ S L+ + GD+R+A+ MQ Q G+I ++E++G Sbjct: 69 FLELNASDERGIDIIRNNIKDFAKI-----RPSNKL--GFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDS-LDAIYEISDGDMRKAINVMQAIQST-GEIKPSKIYEISG 221 HSP 2 Score: 74.7146 bits (182), Expect = 1.503e-42 Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPK +DD++ + E + L+ + GDLPHL+F GP GTGKTS +A +LFGD Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGD 63
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_ARXAD (Replication factor C subunit 3 OS=Arxula adeninivorans GN=RFC3 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 9.579e-42 Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCC 857 LELNASDERGI VVRD++KTFA + + G +KLVILDEAD+MTNAAQ AL FC++ NY ++ P + SRC++FRF PL + + RL + E VD+ S + + GD+RRAL +Q C Sbjct: 84 LELNASDERGIDVVRDQIKTFA--STRQIFSSG-----FKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDL-SPEAFQSLLHLSSGDMRRALNVLQAC 219 HSP 2 Score: 77.0258 bits (188), Expect = 9.579e-42 Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 WVEKYRP T+D++ V+ +++ + G LPHLLF+GPPGTGKT+ I+A ARQ++G R+ + Sbjct: 19 WVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYRNMI 83
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_YEAST (Replication factor C subunit 3 OS=Saccharomyces cerevisiae GN=RFC3 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.688e-41 Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860 LELNASD+RGI VVR+++K FA ++ +KL+ILDEAD+MTNAAQ AL FC++ NY ++ P + SRC++FRF+PL +E + +R+ + E + + S + + ++ GD+RR L +Q C+ Sbjct: 80 LELNASDDRGIDVVRNQIKDFASTRQIFSKG-------FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRVLNVLQSCK 216 HSP 2 Score: 83.5741 bits (205), Expect = 4.688e-41 Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 WVEKYRP+T+D++ Q EV+ +R+ + G LPHLLFYGPPGTGKTS I+A AR+++G Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 5.474e-41 Identity = 93/186 (50.00%), Postives = 123/186 (66.13%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLY--GQITLDGLFEVTGLVP 917 L LS L G L S LELNASDERGI ++R+KVK+FA+ TV+ + DG PCPP+K++ILDEADSMT AQAAL FCLICNY++RII P++SRCSK+RFKPL EN++KRL+ I A + V + G V+ V+ GGD+R+A+T +Q L+ IT+ + E+ G VP Sbjct: 70 LALSRELFGPQLMKSR---VLELNASDERGISIIREKVKSFAKTTVTN-KVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPG-VVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVP 250 HSP 2 Score: 80.8777 bits (198), Expect = 1.149e-14 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 WVE YRPKT+D + Q VQVL++ L +LPH+LFYG PGTGKTS ILA +R+LFG Sbjct: 21 WVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFG 78 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |