FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METMP (Replication factor C small subunit OS=Methanococcus maripaludis GN=rfcS PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.038e-40 Identity = 66/160 (41.25%), Postives = 99/160 (61.88%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LK+I E +++ G + + + GD+R+A+ +Q + +IT + +++V Sbjct: 69 FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKV 220 HSP 2 Score: 68.5514 bits (166), Expect = 1.038e-40 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+GD R+ Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRE 67
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.760e-40 Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFA---QLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 +ELNASD+RGI VR+++K FA Q+ S +K++ILDEAD+MT AAQ AL FC+ICNY+++I P I SRC++FRF+PL + + K + + SE ++ + + + GD+R+AL +Q C Y I + ++ G Sbjct: 90 MELNASDDRGIDAVREQIKNFASTRQIFAST----------FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKM-AVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVG 242 HSP 2 Score: 78.1814 bits (191), Expect = 1.760e-40 Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 WVEKYRP ++D+V +++ L + ++ +PH+LFYGPPGTGKTS ILA AR+++G R+++ Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQL 89
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METM7 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.898e-40 Identity = 70/169 (41.42%), Postives = 101/169 (59.76%), Query Frame = 3 Query: 396 YLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 Y ET E FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LKEI E + + G + + + GD+R+A+ +Q + +T + +++V Sbjct: 61 YGETWREN-FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKV 220 HSP 2 Score: 67.0106 bits (162), Expect = 3.898e-40 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+G+ R+ Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRE 67
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METM6 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.123e-39 Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LK+I E + + G + + + GD+R+A+ +Q + +T + +++V Sbjct: 69 FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKV 220 HSP 2 Score: 68.1662 bits (165), Expect = 1.123e-39 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+GD R+ Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRE 67
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METM5 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.907e-39 Identity = 69/169 (40.83%), Postives = 101/169 (59.76%), Query Frame = 3 Query: 396 YLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 Y ET E FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LK+I E + + G + + + GD+R+A+ +Q + +T + +++V Sbjct: 61 YGETWREN-FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKV 220 HSP 2 Score: 66.6254 bits (161), Expect = 1.907e-39 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+G+ R+ Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRE 67
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS4_MIMIV (Putative replication factor C small subunit L510 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.230e-39 Identity = 58/143 (40.56%), Postives = 86/143 (60.14%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTR-PDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 +E NASD+RGI VR+K+ A+ V+ + DG P YK++ILDEADSMT+ AQ AL FC ICNY+++I I SRCS FK LS E ++++L +I E +++ ++L +D GD+R+A+ +Q Sbjct: 74 IEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPK-NILHTIIDVSNGDMRKAIMLLQ 215 HSP 2 Score: 73.9442 bits (180), Expect = 3.230e-39 Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 W+EKYRPK ++DI ++ + + G++ H LFYGPPGTGKTSAILA R++F + ++RV Sbjct: 9 WIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFKEHFQNRV 73
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METHJ (Replication factor C small subunit OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.321e-39 Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + F ELNASDERGI VVR+++K FA RT P G +K++ LDEAD++T AQ+AL F L CNY ++II PI SRC+ +RF+PL R+ V + +K I A + + V + V++ GD+R+A+ A+Q L I+ D +F +T Sbjct: 69 QMNFRELNASDERGIDVVRNQIKQFA-----RTSPFGGST--FKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTV-TEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAIT 224 HSP 2 Score: 72.4034 bits (176), Expect = 9.321e-39 Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP+ ++DI+ Q E+++ LR +A ++PHLLF G GTGKT+A +A AR+ FG+ Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGE 66
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 9.321e-39 Identity = 59/161 (36.65%), Postives = 94/161 (58.39%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 FLELNASD+RGI VVRD++K+FA+ + ++++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF PL V ++++ I +EG+++ V + V GD+R+A+ +Q + G + + ++ +T Sbjct: 78 FLELNASDQRGIDVVRDRIKSFARASFGGY--------DHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGV-DALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTIT 229 HSP 2 Score: 74.7146 bits (182), Expect = 9.321e-39 Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W+EKYRP+T+DDIV + + L++ +A DLPHLLF GP G GKT+A A A++++GD R+ Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDWRE 76
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 1.579e-38 Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = 3 Query: 396 YLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSR--TRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 Y T + LELNASDERGI VVR+ + FAQ + + P+KLVILDEAD+MT AQ AL FC+ICNY++ I+P I SRC++FRF PL ++ ++ RL+ I +E + + + + + GD+R + +Q + ++ + +++ G Sbjct: 87 YSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKM-TPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIG 258 HSP 2 Score: 76.6406 bits (187), Expect = 1.579e-38 Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLF 400 WVEKYRP +D++V ++V+ L + + LPHLLFYGPPGTGKT+ +LAAARQ++ Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMY 87
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_UNCMA (Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.499e-38 Identity = 62/163 (38.04%), Postives = 94/163 (57.67%), Query Frame = 3 Query: 417 TGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + F+ELNASDERGI VVR+ +K FA RT P G +K++ LDEAD++T+ AQ+AL F + CNY S+II PI SRC+ +RF PL+ ++ + I +EG+ + ++ + GD+RRA+ A+Q + IT D +++ T Sbjct: 69 SNFIELNASDERGIDVVRNNIKNFA-----RTAPLGEA--KFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG-MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTT 223 HSP 2 Score: 68.5514 bits (166), Expect = 3.499e-38 Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRP+ ++D++ ++ + L + G+LPHLLF GPPG GKT+ +A AR+L+G+ Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGE 65 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |