FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_ENCCU (Replication factor C subunit 4 OS=Encephalitozoon cuniculi GN=RFC4 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.875e-27 Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 3 Query: 369 VLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGL 911 +L+ RLLGN + G LELNASDERGI VR +K+FAQ V + C +K++ILDEADSMT AQ A+ F LICN ++I PI SRC+ RF + + ++KRLKEI EG+ + + L+ V+ GD+R++L +Q C G + D + ++ GL Sbjct: 54 ILARRLLGN------KEGLLELNASDERGIDTVRTTIKSFAQRRV-------KDCE-FKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRI-TAEALDLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGL 219
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRKO (Replication factor C small subunit OS=Pyrococcus kodakaraensis GN=rfcS PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.309e-26 Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 FLELNASDERGI V+R+KVK FA RT+P G +K++ LDEAD++T AQ AL F L CNY S+II PI SRC+ FRF+PL E++ KR++ I +EG+++ + L+ + GDLRRA+ +Q L +IT + +F V Sbjct: 619 FLELNASDERGINVIREKVKEFA-----RTKPIGGAS--FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRIRYIAENEGLEL-TEEGLQAILYVAEGDLRRAINVLQAAAALDTKITDENVFLV 770
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRHO (Replication factor C small subunit OS=Pyrococcus horikoshii GN=rfcS PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.709e-26 Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 FLELNASDERGI V+R+KVK FA RT+P G +K++ LDEAD++T AQ AL F L CNY S+II PI SRC+ FRF+PL E++ KRL+ I +EG+++ + L+ + GD+RRA+ +Q L +IT + +F V Sbjct: 606 FLELNASDERGINVIREKVKEFA-----RTKPIGGAS--FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 757
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRFU (Replication factor C small subunit OS=Pyrococcus furiosus GN=rfcS PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.709e-26 Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 FLELNASDERGI V+R+KVK FA RT+P G +K++ LDEAD++T AQ AL F L CNY S+II PI SRC+ FRF+PL E++ KRL+ I +EG+++ + L+ + GD+RRA+ +Q L +IT + +F V Sbjct: 604 FLELNASDERGINVIREKVKEFA-----RTKPIGGAS--FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 755
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METVS (Replication factor C small subunit OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.808e-26 Identity = 71/162 (43.83%), Postives = 98/162 (60.49%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 L L+ L GN + + FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E+++K LKEI E ++V S ++ + GD+R+A+ +Q Sbjct: 54 LCLAKDLYGN----TWKENFLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINV-EKSGMDAIIYVSEGDMRKAINVLQ 203
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METST (Replication factor C small subunit OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rfcS PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.808e-26 Identity = 69/179 (38.55%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG Y + + FLELNASD RGI VR+++K+F +L P++++ LDE D+MT AQ AL F L CNY S+II PI SRC+ FRF P+ N+IKRLK I + EG++ S LE V GD+R+++ +Q +T + +++V Sbjct: 54 LALAKSLLGEYWQQN----FLELNASDARGIDTVRNEIKSFCKLKAVGA--------PFRIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIE-AEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDV 219
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METTH (Replication factor C small subunit OS=Methanobacterium thermoautotrophicum GN=rfcS PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24 Identity = 71/179 (39.66%), Postives = 95/179 (53.07%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ +LG Y + FLELNASD RGI VR +K F +L +P G P ++++ LDE D+MT AQ AL F L CNY S+II PI SRC+ FRF PL +IKRL+ I E ++ LE V GDLR+A+ +Q L +IT +++V Sbjct: 57 LALAREILGEYWRQN----FLELNASDARGIDTVRTSIKNFCRL-----KPVGAP---FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEY-EAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDV 222
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METB6 (Replication factor C small subunit OS=Methanoregula boonei (strain 6A8) GN=rfcS PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24 Identity = 72/188 (38.30%), Postives = 102/188 (54.26%), Query Frame = 3 Query: 342 TGLRVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 TG + K + L + S + F ELNASDERGI VVR+++K FA RTRP G +K++ LDEAD++T AQAAL F L CNY S+II PI SRC+ +RF+PL + V + + I A E +DV + ++ V GD+R+A+ A+Q L I ++ +T Sbjct: 45 TGSAGVGKTTAAVTLAREFFGDSWQMNFRELNASDERGIDVVRNQIKEFA-----RTRPAGDAA--FKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDV-TPEAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAIT 224
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METS3 (Replication factor C small subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.037e-23 Identity = 68/173 (39.31%), Postives = 92/173 (53.18%), Query Frame = 3 Query: 384 LLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 +LG Y + FLELNASD RGI VR+ +K F +L +P G P ++++ LDE D+MT AQ AL F L CNY S+II PI SRC+ FRF P+ E + RLK IC SE + G + E GD+R+A+ +Q Q+ D ++EV Sbjct: 60 ILGEYWRQN----FLELNASDARGIDTVRNDIKNFCRL-----KPVGAP---FRIIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGI-EAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEV 219
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALWD (Replication factor C small subunit OS=Haloquadratum walsbyi (strain DSM 16790) GN=rfcS PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23 Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 + LELNASDERGI VVRD++K FA+ + ++++ LDEADS+T+ AQ+AL F L CNY S+II PI SRC+ FRF PLS + + K+I A+E +++ L+ V GGD+RRA+ ++Q Sbjct: 401 QNNLLELNASDERGIDVVRDRIKNFARSSFGGY--------DHRIIFLDEADSLTDDAQSALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDG-LDALVYAAGGDMRRAINSLQ 537 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |