FC877902

Overview
NameFC877902
Unique NameFC877902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2318 contig Ccv1_Contig2318:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_ENCCU (Replication factor C subunit 4 OS=Encephalitozoon cuniculi GN=RFC4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.875e-27
Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 3
Query:  369 VLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGL 911
            +L+ RLLGN      + G LELNASDERGI  VR  +K+FAQ  V       + C  +K++ILDEADSMT  AQ A+            F LICN  ++I  PI SRC+  RF  + +  ++KRLKEI   EG+ + +   L+  V+   GD+R++L  +Q C    G +  D + ++ GL
Sbjct:   54 ILARRLLGN------KEGLLELNASDERGIDTVRTTIKSFAQRRV-------KDCE-FKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRI-TAEALDLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGL 219          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRKO (Replication factor C small subunit OS=Pyrococcus kodakaraensis GN=rfcS PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.309e-26
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            FLELNASDERGI V+R+KVK FA     RT+P G     +K++ LDEAD++T  AQ AL            F L CNY S+II PI SRC+ FRF+PL  E++ KR++ I  +EG+++ +   L+  +    GDLRRA+  +Q    L  +IT + +F V
Sbjct:  619 FLELNASDERGINVIREKVKEFA-----RTKPIGGAS--FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRIRYIAENEGLEL-TEEGLQAILYVAEGDLRRAINVLQAAAALDTKITDENVFLV 770          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRHO (Replication factor C small subunit OS=Pyrococcus horikoshii GN=rfcS PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.709e-26
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            FLELNASDERGI V+R+KVK FA     RT+P G     +K++ LDEAD++T  AQ AL            F L CNY S+II PI SRC+ FRF+PL  E++ KRL+ I  +EG+++ +   L+  +    GD+RRA+  +Q    L  +IT + +F V
Sbjct:  606 FLELNASDERGINVIREKVKEFA-----RTKPIGGAS--FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 757          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRFU (Replication factor C small subunit OS=Pyrococcus furiosus GN=rfcS PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.709e-26
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            FLELNASDERGI V+R+KVK FA     RT+P G     +K++ LDEAD++T  AQ AL            F L CNY S+II PI SRC+ FRF+PL  E++ KRL+ I  +EG+++ +   L+  +    GD+RRA+  +Q    L  +IT + +F V
Sbjct:  604 FLELNASDERGINVIREKVKEFA-----RTKPIGGAS--FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 755          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METVS (Replication factor C small subunit OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.808e-26
Identity = 71/162 (43.83%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            L L+  L GN    + +  FLELN+SDERGI V+R KVK FA     RT+P G    P+K++ LDE+D++T+ AQ AL            F L CNY S+IIPPI SRC+ FRF PL  E+++K LKEI   E ++V   S ++  +    GD+R+A+  +Q
Sbjct:   54 LCLAKDLYGN----TWKENFLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINV-EKSGMDAIIYVSEGDMRKAINVLQ 203          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METST (Replication factor C small subunit OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rfcS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.808e-26
Identity = 69/179 (38.55%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG Y + +    FLELNASD RGI  VR+++K+F +L             P++++ LDE D+MT  AQ AL            F L CNY S+II PI SRC+ FRF P+   N+IKRLK I + EG++    S LE  V    GD+R+++  +Q        +T + +++V
Sbjct:   54 LALAKSLLGEYWQQN----FLELNASDARGIDTVRNEIKSFCKLKAVGA--------PFRIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIE-AEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDV 219          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METTH (Replication factor C small subunit OS=Methanobacterium thermoautotrophicum GN=rfcS PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 71/179 (39.66%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  +LG Y   +    FLELNASD RGI  VR  +K F +L     +P G P   ++++ LDE D+MT  AQ AL            F L CNY S+II PI SRC+ FRF PL    +IKRL+ I   E ++      LE  V    GDLR+A+  +Q    L  +IT   +++V
Sbjct:   57 LALAREILGEYWRQN----FLELNASDARGIDTVRTSIKNFCRL-----KPVGAP---FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEY-EAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDV 222          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METB6 (Replication factor C small subunit OS=Methanoregula boonei (strain 6A8) GN=rfcS PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 72/188 (38.30%), Postives = 102/188 (54.26%), Query Frame = 3
Query:  342 TGLRVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            TG   + K   +  L   +   S +  F ELNASDERGI VVR+++K FA     RTRP G     +K++ LDEAD++T  AQAAL            F L CNY S+II PI SRC+ +RF+PL  + V + +  I A E +DV +   ++  V    GD+R+A+ A+Q    L   I    ++ +T
Sbjct:   45 TGSAGVGKTTAAVTLAREFFGDSWQMNFRELNASDERGIDVVRNQIKEFA-----RTRPAGDAA--FKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDV-TPEAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAIT 224          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METS3 (Replication factor C small subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.037e-23
Identity = 68/173 (39.31%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  384 LLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            +LG Y   +    FLELNASD RGI  VR+ +K F +L     +P G P   ++++ LDE D+MT  AQ AL            F L CNY S+II PI SRC+ FRF P+  E +  RLK IC SE  +   G + E       GD+R+A+  +Q       Q+  D ++EV
Sbjct:   60 ILGEYWRQN----FLELNASDARGIDTVRNDIKNFCRL-----KPVGAP---FRIIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGI-EAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEV 219          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALWD (Replication factor C small subunit OS=Haloquadratum walsbyi (strain DSM 16790) GN=rfcS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            +   LELNASDERGI VVRD++K FA+ +             ++++ LDEADS+T+ AQ+AL            F L CNY S+II PI SRC+ FRF PLS   +  + K+I A+E +++     L+  V   GGD+RRA+ ++Q
Sbjct:  401 QNNLLELNASDERGIDVVRDRIKNFARSSFGGY--------DHRIIFLDEADSLTDDAQSALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDG-LDALVYAAGGDMRRAINSLQ 537          
The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RFC4_ENCCU5.875e-2739.78Replication factor C subunit 4 OS=Encephalitozoon ... [more]
RFCS_PYRKO1.309e-2644.38Replication factor C small subunit OS=Pyrococcus k... [more]
RFCS_PYRHO1.709e-2644.38Replication factor C small subunit OS=Pyrococcus h... [more]
RFCS_PYRFU1.709e-2644.38Replication factor C small subunit OS=Pyrococcus f... [more]
RFCS_METVS3.808e-2643.83Replication factor C small subunit OS=Methanococcu... [more]
RFCS_METST3.808e-2638.55Replication factor C small subunit OS=Methanosphae... [more]
RFCS_METTH4.655e-2439.66Replication factor C small subunit OS=Methanobacte... [more]
RFCS_METB64.655e-2438.30Replication factor C small subunit OS=Methanoregul... [more]
RFCS_METS31.037e-2339.31Replication factor C small subunit OS=Methanobrevi... [more]
RFCS_HALWD1.769e-2341.78Replication factor C small subunit OS=Haloquadratu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bp
CTGTCAGAAACTGGCGGGTAAAAAATGTACAAAGCAGGCAGCCAGATCTT
ATAAGTCAACAAAATAAATACAAAACAGATGAATAAAAGCTAACTAAAAT
AGCTTGTTATTTAGTTACCTAAAAGCTTTAATAATGCAGGCATTCCTTAA
AACGGGTAAGATATCCAACAATGAAAAACCAGCATCATCAGTTCCGAAAA
CTGGCGGCAAGAAGAAACCACCGGCACCATGGGTAGAGAAATACCGTCCC
AAGACTATAGACGATATAGTAGACCAAGGTGAAGTAGTGCAAGTATTGCG
GGAATGTTTGGCGGGTGGTGACTTGCCGCATCTTCTGTTCTACGGGCCTC
CGGGTACTGGTAAAACTAGTGCTATCCTGGCGGCTGCTCGGCAACTATTT
GGAGACATCAGCAGAGACCGGGTTTTTGGAGCTCAATGCTTCTGATGAAC
GGGGCATACAAGTAGTCAGGGATAAAGTGAAGACATTTGCACAGCTCACA
GTCAGCAGGACACGACCTGATGGCCGACCATGTCCTCCGTATAAGCTGGT
TATTCTGGATGAAGCTGACTCCATGACCAACGCAGCCCAGGCGGCACTGC
GACGTACCATGGAGAAGGAAACCAGGACCACGAGATTCTGTTTAATCTGC
AACTATGTGTCAAGGATCATCCCGCCTATTACTAGCAGATGTTCCAAGTT
TAGATTCAAACCACTTTCAAGAGAAAATGTTATTAAAAGGTTAAAAGAGA
TCTGTGCAAGCGAAGGCGTGGACGTGGGCAGTGGGTCAGTGCTGGAGCAG
GCGGTGGACACGTGCGGCGGGGACCTGCGCCGCGCGCTCACCGCCATGCA
GTGCTGCCAGAGACTCTACGGGCAGATCACTCTGGACGGACTCTTCGAGG
TGACGGGGCTGGTGCCTGACCGG
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