FC877903

Overview
NameFC877903
Unique NameFC877903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3467 contig Ccv1_Contig3467:1..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MANA_ECOLI (Mannose-6-phosphate isomerase OS=Escherichia coli (strain K12) GN=manA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 70/205 (34.15%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  261 RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNV----PEIVELVGSEEANRV 830
            +L  SVQ Y WG   S + +++LYG+ +       +P AE WMG H    S +                       G+IVSL+  I  + + +LG+ V  R+G +LPFLFKVL  A+ LSIQ HP+K       AK     +P       YKD NHKPE+  A+T F  + +F    E+ S+LQ V    P I   +   +A R+
Sbjct:    3 KLINSVQNYAWG---SKTALTELYGMENPS----SQPMAELWMGAHPKSSSRVQNA-------------------AGDIVSLRDVIESDKSTLLGEAVAKRFG-ELPFLFKVLCAAQPLSIQVHPNKHNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQQPDAERL 180          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MANA_SHIFL (Mannose-6-phosphate isomerase OS=Shigella flexneri GN=manA PE=3 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 70/205 (34.15%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  261 RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNV----PEIVELVGSEEANRV 830
            +L  SVQ Y WG   S + +++LYG+ +       +P AE WMG H    S +                       G+IVSL+  I  + + +LG+ V  R+G +LPFLFKVL  A+ LSIQ HP+K       AK     +P       YKD NHKPE+  A+T F  + +F    E+ S+LQ V    P I   +    A R+
Sbjct:    3 KLINSVQNYAWG---SKTALTELYGMENPS----SQPMAELWMGAHPKSSSRVQNA-------------------AGDIVSLRDVIESDKSTLLGEAVAKRFG-ELPFLFKVLCAAQPLSIQVHPNKHNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQQPHAERL 180          
The following BLAST results are available for this feature:
BLAST of FC877903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MANA_ECOLI3.658e-1734.15Mannose-6-phosphate isomerase OS=Escherichia coli ... [more]
MANA_SHIFL6.240e-1734.15Mannose-6-phosphate isomerase OS=Shigella flexneri... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877903 ID=FC877903; Name=FC877903; organism=Citrus clementina; type=EST; length=844bp
AAAAAGGAAACTGTACAGTGAGTCAGAGTCATAATAAGCATAGCCCACTT
CGTCTTCACTCAATCTCTCGAATCTCTCTCTTTCAACACGCTGTTTCCCT
CTCTCTTGTTACCCTTTCAAACTCTTTAAAAACCAGCAATGCCACCCCAT
TCTAGCCATTACCCATTTACCCATACACTCTTTTAGGACTGCCCGTCTGC
TCATTTCTTCGAAAATTCAGTACCATGGACGCTGATTCGAAGGCTGCAAG
GAGGCTGCTGAGGCTGACGTGTTCCGTCCAGAAATACGATTGGGGCCGAA
CCGGTTCTGACTCCCTCGTTTCCAAGCTGTACGGGTTGAACTCTGGGAAG
AGGACTGATATCGACAAGCCTTATGCCGAGTTCTGGATGGGAACTCACGA
GTCTGGGCCCTCGTTTCTGGCGAAGAAGGGCGGTGCTGGTGGCGTTGCTG
GCGCAGTAGTAAACGGGTCGTCGGCGAATGGTGGGTGTGGTGAGATTGTC
AGTTTGAAATCATGGATATTGAAGAATCCTAATGTGCTTGGTGATAAGGT
TTTACACCGTTGGGGCTGTGATCTCCCTTTCTTGTTCAAGGTACTTTCAG
TTGCGAAAGCATTGTCAATACAGGCTCATCCAGATAAGGAGTTGGCAAAG
ACACTGCACAAATTACTGCCAAATGTATATAAGGATGACAATCACAAGCC
TGAGATGGCCTTGGCAATAACAGAGTTCGAGGTCCTTTGTAGCTTTATCA
GTCTTCAGGAGCTCAAGAGTGTGCTGCAAAACGTTCCTGAGATTGTGGAA
CTTGTTGGCAGCGAGGAAGCAAACCGAGTTTTGCATGTTGAAAT
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