FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_METCA (ATP-dependent Clp protease proteolytic subunit 2 OS=Methylococcus capsulatus GN=clpP2 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            R++++   +   +  LV+A+L++L+  +P   I+LYINS G         G+ + G AIYDT+  +K +V T+ VG A  M  LLLA G  GKR+ +PH++IMI QP     G   ASD+ I A+E +  RD L K+L
Sbjct:   25 RVIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLYINSPG---------GLVTAGLAIYDTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQG--QASDIDIHAREILAVRDRLNKIL 151          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_METCA (ATP-dependent Clp protease proteolytic subunit 1 OS=Methylococcus capsulatus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            R++++   +   +  LV+A+L++L+  +P   I+LYINS G         G+ + G AIYDT+  +K +V T+ VG A  M  LLLA G  GKR+ +PH++IMI QP     G   ASD+ I A+E +  RD L K+L
Sbjct:   36 RVIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLYINSPG---------GLVTAGLAIYDTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQG--QASDIDIHAREILAVRDRLNKIL 162          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R  L ++L
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTRAKLNQIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+ +G P+   V   +V++L++L   DP+  I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IMI QP   + G   A+++ I AK  +  RD L ++L
Sbjct:   28 RIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQG--QATEIEIAAKRILFLRDKLNRIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G  +   V + ++++L+ L   DPK  I L+INS G         G  S   AIYD +  ++ +V T+A+G A   A ++L AGTKGKRF MP+ +IMI QP   +SG   A DV I+AKE M N++ +  ++
Sbjct:   88 RIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG---------GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASG--QAIDVEIQAKEVMHNKNNVTSII 214          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +  AV + +VA++++L+  DP+  I +Y+NS G         G  + G AIYDT+ Q+  +V T+  G A  M   LL+ GTKGKR  +P+A+IMI QP   + G   A D+ I+AKE +  ++TL  LL
Sbjct:   33 RIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPG---------GSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQG--QAVDIEIQAKEILFLKETLNGLL 159          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNS9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9902) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +       +VA++++L+  DP+  IYLYINS G         G   +G  I+DT+  +K +V TV VG A  M   LL AGTKGKR  + H++IMI QP   +SG   ASD+ I+A E +  +D L
Sbjct:   26 RIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGASG--QASDIRIQADEILYLKDRL 148          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_CHLFF (ATP-dependent Clp protease proteolytic subunit 1 OS=Chlamydophila felis (strain Fe/C-56) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPAS-DVLIRAKEAMVNRDTLVKLL 818
            RIV IG  +   +   V+A+L++L   DP+  I ++INS G         G  + G AIYDT+  + C+V+T  +G A  M  LLL+AGTKGKR+ +PH+++MI Q   PS G++  S D+ ++A E +  +  L  +L
Sbjct:   28 RIVMIGQEITEPLANTVIAQLLFLMSEDPQKDIKVFINSPG---------GYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMIHQ---PSGGIIGTSADIQLQAAEILTLKKHLANIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +      LVVA+L++L+  DP   IYLYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LL AG KGKRF +P+++IMI QP     G   A+D+ I A   +  +D L  +L
Sbjct:   28 RIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPG---------GSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQG--QATDIGIHANRILKIKDKLNSIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKL 815
            RI+++G  +   +   +VA ++YL   DP   I LYINS G         G  + G AIYDT+  +K +V T+ VG A  M   LLAAGTKGKR  +PH++IMI QP   + G   A+D+ I A+E +  R  L +L
Sbjct:   31 RIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPG---------GSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRG--QATDIEIEAREILRVRRQLNEL 156          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_METCA3.758e-1939.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_METCA3.758e-1939.86ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_STAS14.908e-1939.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW4.908e-1939.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP4_ARATH4.908e-1939.86ATP-dependent Clp protease proteolytic subunit 4, ... [more]
CLPP2_SYNS94.908e-1939.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNS94.908e-1940.30ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_CHLFF4.908e-1938.13ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CLONN6.409e-1939.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_THEEB6.409e-1940.88ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
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