FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNPX (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain WH8102) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +       +VA++++L+  DP+  IYLYINS G         G   +G  I+DT+  +K +VHTV VG A  M   LL AGTKGKR  + H++IMI QP   + G   ASD+ I+A E +  ++ L
Sbjct:   26 RIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGARG--QASDIRIQADEILYLKERL 148          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +  AV + +VA++++L+  DP+  I +YINS G         G  + G AIYDT+ Q+  +V T+  G A  M   LL+ GTKGKR  +P+A+IMI QP   + G   A D+ I+AKE +  ++TL  L+
Sbjct:   33 RIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPG---------GSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQG--QAVDIEIQAKEILYLKETLNGLM 159          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNP6 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G P+   V   +VA+L++L+  DP+  IYLYINS G         G   +G  I+DT+  ++ +V TV VG A  M   LLAAG KGKR  + H++IMI QP   + G   A D+ I+A E +  +  L ++L
Sbjct:   26 RIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQG--QAKDIEIQANEILYIKQNLNEVL 152          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNE7 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G P+   V   +VA+L++L+  DP+  IYLYINS G         G   +G  I+DT+  ++ +V TV VG A  M   LLAAG KGKR  + H++IMI QP   + G   A D+ I+A E +  +  L ++L
Sbjct:   26 RIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQG--QAKDIEIQANEILYIKQNLNEVL 152          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus halodurans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+ +G  +   V   +VA+L++LQ  DP   I LYINS G         G  + G AIYDT+  +K  V T+ +G A  M   LLAAG KGKRF +P++++MI QP   + G   ASD+ I  +  +  R+TL ++L
Sbjct:   28 RIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPG---------GSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRG--QASDIEIHTRRILEMRETLNRIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_DECAR (ATP-dependent Clp protease proteolytic subunit OS=Dechloromonas aromatica (strain RCB) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            R++++  P+      LVVA+L++L+  +P   IY YINS G         G  + G +IYDT+  +K +V T+ +G A  M   LL AG KGKRF +P++++MI QP     G   ASD+ I AKE +  RD L +++
Sbjct:   41 RVIFLVGPVNDVTANLVVAQLLFLEAENPDKDIYFYINSPG---------GSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMIHQPLGGFQG--QASDIAIHAKEILSIRDRLNRIM 167          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP5_STRAW (ATP-dependent Clp protease proteolytic subunit 5 OS=Streptomyces avermitilis GN=clpP5 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 54/138 (39.13%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+       V+A+ M+L+ + P   I LYINS G         G  S   A+YDT+  + C+V T+ +G A   A +LLA GT GKR  +P A+++I QP LP+     ASD++I+A E    R+ L +LL
Sbjct:   34 RIVFLGTPIDDTSANDVMAQFMHLEHLAPDRDISLYINSPG---------GSFSAMTAVYDTMQFVSCDVETICLGQAASAAAVLLAGGTPGKRLALPGARVLIHQPSLPAPVQGQASDLVIQAAELARTREQLEELL 162          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP4_FRASC (ATP-dependent Clp protease proteolytic subunit 4 OS=Frankia sp. (strain CcI3) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RIV++G  +  AV   + A+L+ L   DP A IYLYINS G         G  S G AIYDT+  +  +V TVA+G A  M   LL AGT GKR+ +PHA+IM+ QP     G   A+D+ I+A++ +  + TL
Sbjct:   43 RIVFLGSVVEDAVANAISAKLLLLAAEDPAADIYLYINSPG---------GSVSAGMAIYDTMQYVGNDVATVALGLAGSMGQFLLCAGTAGKRYALPHARIMMHQPHGGIGG--TAADISIQAEQMLYTKRTL 165          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV +G  +   V  ++VA+L++L+  DP   I LYINS G         G  + G AIYDT+  +KC V T+ VG A  M  +LL AG KGKR+ +P ++IMI QP     G   A+D+ I+AKE +  +  L +L+
Sbjct:   30 RIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG---------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRG--QATDIEIQAKEILRMKAKLNELI 156          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_CHLTR (ATP-dependent Clp protease proteolytic subunit 2 OS=Chlamydia trachomatis GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPAS-DVLIRAKEAMVNRDTLVKLL 818
            RIV IG  +   +   V+A+L++L   DP   I ++INS G         G  + G AIYDT+  + C+V+T  +G A  M  LLL+AGTKGKR+ +PH+++MI Q   PS G++  S D+ ++A E +  +  L  +L
Sbjct:   28 RIVMIGQEITEPLANTVIAQLLFLMSEDPTKDIQIFINSPG---------GYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMIHQ---PSGGIIGTSADIQLQAAEILTLKKHLSNIL 154          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_SYNPX6.409e-1939.55ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNSC6.409e-1939.13ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNP66.409e-1939.13ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNE76.409e-1939.13ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BACHD6.409e-1939.86ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_DECAR8.371e-1938.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP5_STRAW8.371e-1939.13ATP-dependent Clp protease proteolytic subunit 5 O... [more]
CLPP4_FRASC8.371e-1942.54ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP2_MYXXA8.371e-1940.58ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_CHLTR8.371e-1938.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
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