FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_CHLTA (ATP-dependent Clp protease proteolytic subunit 2 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPAS-DVLIRAKEAMVNRDTLVKLL 818
            RIV IG  +   +   V+A+L++L   DP   I ++INS G         G  + G AIYDT+  + C+V+T  +G A  M  LLL+AGTKGKR+ +PH+++MI Q   PS G++  S D+ ++A E +  +  L  +L
Sbjct:   28 RIVMIGQEITEPLANTVIAQLLFLMSEDPTKDIQIFINSPG---------GYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMIHQ---PSGGIIGTSADIQLQAAEILTLKKHLSNIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_CHLMU (ATP-dependent Clp protease proteolytic subunit 2 OS=Chlamydia muridarum GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPAS-DVLIRAKEAMVNRDTLVKLL 818
            RIV IG  +   +   V+A+L++L   DP   I ++INS G         G  + G AIYDT+  + C+V+T  +G A  M  LLL+AGTKGKR+ +PH+++MI Q   PS G++  S D+ ++A E +  +  L  +L
Sbjct:   28 RIVMIGQEITEPLANTVIAQLLFLMSEDPTKDIQIFINSPG---------GYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMIHQ---PSGGIIGTSADIQLQAAEILTLKKHLSNIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV +G  +   V  ++VA+L++L+  DP   I LYINS G         G  + G AIYDT+  +KC V T+ VG A  M  +LL AG KGKR+ +P ++IMI QP     G   A+D+ I+AKE +  +  L +L+
Sbjct:   30 RIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG---------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRG--QATDIEIQAKEILRMKAKLNELI 156          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +   +  L+VA+L++L   DP+  IYLYINS G         G  + G  I+DT+  ++ +V T+  G A  M   LL+AGTKGKR  +PH++IMI QP   + G   A+D+ I+A+E + ++  L
Sbjct:   27 RIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPG---------GSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQG--QATDIEIQAREILYHKRRL 149          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_WOLTR (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAM 788
            RI+++  P+   +  ++VA+L++L+  +P   IY+YINS G         G+ + G +IYDT+  +K +V T+ +G A  M  LLLAAGT+GKR+ +PH++IMI QP     G   A+D+ I A E +
Sbjct:   28 RIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPG---------GVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQG--QATDIEIHANEIL 144          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_VESOH (ATP-dependent Clp protease proteolytic subunit OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 56/134 (41.79%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++  P+   +  +VVA+L++L+  +P   I+LYINS G         G  S G AIYDT+  +K ++ T+ +G A  M  LLL AGTKGKRF +P+ + MI QP    SG   ASDV I A+E +  R  L
Sbjct:   33 RIIFLVGPIEDYMANVVVAQLLFLESENPDKDIHLYINSPG---------GSVSAGLAIYDTMQFIKSDISTLCIGQAASMGALLLTAGTKGKRFALPNVRCMIHQPLGGFSG--QASDVDIHAQEILKVRANL 155          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_NITMU (ATP-dependent Clp protease proteolytic subunit OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 53/138 (38.41%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            R++++  P+  A   L+VA+L++L+  +    I+ YINS G         G+ S G A+YDT+  +K +V T+ +G A  M  LLLAAG KGKRF +P++++MI QP     G   ASD+ I A+E +  ++ L +LL
Sbjct:   43 RVIFLVGPVTEASANLIVAQLLFLESENADKDIHFYINSPG---------GLVSAGMAVYDTMQFIKPDVSTLCIGQAASMGSLLLAAGAKGKRFCLPNSRVMIHQPLGGFQG--QASDIEIHAREILYLKNRLNELL 169          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   V  ++VA+L++L+  DP+  I  YINS G         G  + G AIYDT+  +KC++ T+ +G A  M  +LLAAGT GKR+ +P+++IMI QP     G   A+D+ I  KE +  R  L  +L
Sbjct:   28 RIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYINSPG---------GSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMIHQPLGGFQG--QATDIEIHTKEILRIRKDLNNIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV +   +   V   VVA+L++L+  DP   IYLYINS G         G+ + GF+IYDT+  +K  V T+ +G A  M   LL+ G KGKR+ +P+A+IMI QP   + G   A+D+ I  KE +  + TL K+L
Sbjct:   27 RIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPG---------GVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRYALPNARIMIHQPLGGAQG--QATDIEITTKEILRIKATLNKIL 153          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_CALS8 (ATP-dependent Clp protease proteolytic subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV +   +   +  L+VA+L++L+  DP   IYLYINS G         G  + GFAIYDT+  +K +V T+ VG A  M   LLAAG KGKRF +P+++IMI QP     G   A+D+ I A+  +  +  + ++L
Sbjct:   29 RIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPG---------GSVTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVRG--QATDIKIHAEWILKIKQRINRIL 155          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_CHLTA8.371e-1938.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_CHLMU8.371e-1938.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_MYXXD8.371e-1940.58ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_ANAVT8.371e-1938.06ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_WOLTR1.093e-1839.06ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VESOH1.093e-1841.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITMU1.093e-1838.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESPS1.093e-1838.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC1.093e-1840.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALS81.093e-1839.86ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
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