FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAM 788
            RIV++G P+   V  +V+A+L++L+  DP   I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLA G  GKRF +P+A+IMI QP     G   A+D+ I+A+E +
Sbjct:   30 RIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPG---------GSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQG--QATDIDIQAREIL 146          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMM (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G P+       +VA++++L+  DP+  IYLYINS G         G   +G  I+DT+  +K +V TV VG A  M   LL AG  GKR  + H++IMI QP   + G   ASD+ I+A E +  +D L ++L
Sbjct:   26 RIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMIHQPLGGARG--QASDIRIQADEILFLKDRLNRVL 152          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_TROW8 (ATP-dependent Clp protease proteolytic subunit 2 OS=Tropheryma whipplei (strain TW08/27) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 54/138 (39.13%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G+ +  A  + V+A+L+ L+  D +  I +YINS G         G  +   AIYDT+  ++ ++ TV +G A   A ++L+AGT GKR  +P+A+I+I QP + SSG   ASD+ I+A+E M  R+ L K L
Sbjct:   33 RIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPG---------GSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTL 161          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_TROWT (ATP-dependent Clp protease proteolytic subunit 1 OS=Tropheryma whipplei (strain Twist) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 54/138 (39.13%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G+ +  A  + V+A+L+ L+  D +  I +YINS G         G  +   AIYDT+  ++ ++ TV +G A   A ++L+AGT GKR  +P+A+I+I QP + SSG   ASD+ I+A+E M  R+ L K L
Sbjct:   33 RIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPG---------GSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTL 161          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_PROVI (ATP-dependent Clp protease proteolytic subunit OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   V  L++A+L++L+  DP   I++Y+NS G         G  S G  IYDT+  ++ +V TV VG A  M   LLA+G KGKR  +PH++IMI QP   + G    SD++I+A+E    R  L +++
Sbjct:   53 RIIFLGSGIDEHVAGLIMAQLIFLESEDPDRDIFIYVNSPG---------GSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMIHQPSGGAQG--QESDIIIQAREIEKIRRLLEEIM 179          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_JANMA (ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium sp. (strain Marseille) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++  P+   +  L+VA+L++L+  +P   I LYINS G         G  S G AIYDT+  +K  V T+  G A  M   LLAAG KGKRF +P+++IMI QP   + G   ASD+ I+A+E +  R+ L  +L
Sbjct:   44 RIIFLVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPG---------GSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQG--QASDIEIQAREILYLRERLNAIL 170          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 52/138 (37.68%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+   ++ L++A+L++L+  DP   I+LYINS G         G  +   A+YDT+  +K +V T+ +G A     LLLA+GTKGKR+ +P+A++MI QP     G   A++  I  KE +  R+ L ++L
Sbjct:   28 RIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPG---------GSVTAALAMYDTIQYIKPDVATICMGQAASAGALLLASGTKGKRYALPNARVMIHQPAGGVQG--KATEAEIHIKELLRLRERLNEIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G  +  A++ LV+A+L++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M   LL+ G KGKRF + +++IMI QP     G   A+D+ I A+E +  +  L +L+
Sbjct:   27 RIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPG---------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLTNSRIMIHQPLGGFQG--QATDIHIHAQEILRMKKKLNELM 153          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_FRAP2 (ATP-dependent Clp protease proteolytic subunit OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++   +      LV+A+L++L+  DP   IY YINS G         GM + G  +YDT+  +K +V+T+ +G A  M  LLLA G KGKR+ +P ++IMI QP     G   ASD+ I AK  +  +D L K+L
Sbjct:   31 RIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG---------GMVTAGMGVYDTMQFIKPDVNTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRG--QASDIEIHAKNILRIKDRLNKVL 157          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_DESAA (ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   V   ++A+L++L+  DP+  I  YINS G         G  + G AIYDT+  +K E+ TV +G A  M  +LLAAG  GKR+ +P+A+I+I QP     G   ASD+ I+A+E +  ++ L ++L
Sbjct:   28 RIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPG---------GSVTAGMAIYDTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQG--QASDIAIQAQEILRMKEALNEIL 154          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ANADF1.428e-1841.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMM1.428e-1838.41ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_TROW81.428e-1839.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_TROWT1.428e-1839.13ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PROVI1.865e-1837.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_JANMA1.865e-1840.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH1.865e-1837.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR1.865e-1839.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRAP21.865e-1839.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAA1.865e-1837.68ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
back to top