FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJA (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.526e-20
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL--PASDVLIRAKEAMVNRDTLVKLL 818
            RI++IG P+   +   +V  ++YL   DP+  I +YINS G         G  + G AIYDT+  +K ++ TV VG A  M   LLAAGTKGKRF +PH++IM+ QP L   G++   ASD+ IRA+E +  +  + +LL
Sbjct:   31 RILFIGEPIDDNLANTIVGVMLYLNSQDPQKDIVMYINSPG---------GSVTAGMAIYDTMNHVKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSL---GMIQGQASDIEIRARETLRVKRRMNELL 158          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_WIGBR (ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia glossinidia brevipalpis GN=clpP PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 52/138 (37.68%), Postives = 86/138 (62.32%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++   +   +  L++A++++L+  DP+  I+LYINS G         G+ + G +IYDT+  +KCEV T+ +G +  MA L+LA+G KGKRF +P+A+IMI QP   S G   A+D+ I   E +  +  +++LL
Sbjct:   28 RIIFVTGKIEDYMANLIIAQMIFLESEDPEKDIFLYINSPG---------GVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARIMIHQPLGGSQG--QATDIAIHTTEILKIKKCMIELL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP3_ANASP (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +   +   ++A ++YL   DP   IYLYINS G         GM + G AIYDT+  +K +V T+ VG A  M   LLAAGTKGKR  +PH++IMI QP   + G   A+D+ I A+E +  R  L
Sbjct:   31 RIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPG---------GMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRG--QATDIEIEAREILRIRHQL 153          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_ANAVT (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +   +   ++A ++YL   DP   IYLYINS G         GM + G AIYDT+  +K +V T+ VG A  M   LLAAGTKGKR  +PH++IMI QP   + G   A+D+ I A+E +  R  L
Sbjct:   31 RIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPG---------GMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRG--QATDIEIEAREILRIRHQL 153          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJB (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. GN=clpP1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS-SGLLPASDVLIRAKEAM 788
            RI++IG P+  ++   +V  ++YL   DP+  I +YINS G         G  + G AIYDT+  +K ++ TV VG A  M   LLAAGTKGKRF +PH++IM+ QP L +  G   ASD+ IRA+E +
Sbjct:   31 RILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPG---------GSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGTIQG--QASDIEIRARETL 148          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   +   ++A ++YL   DP+  I+LYINS G         G  S G AIYDT+  ++ +V T+ VG A  M   LL AG KGKR  +PH++IMI QP   + G   A+D+ I+AKE +  +D L ++L
Sbjct:   30 RIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPG---------GSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQG--QATDIGIQAKEILYTKDRLNQIL 156          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   V  LV+A++++L+  DP   I+LYINS G         G  S G AI+DT+  ++ +V T+ VG A  M   LLAAG KGKRF +P+++IMI QP   + G   A D+ I AK  +  RD L ++L
Sbjct:   29 RIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPG---------GSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQG--QAVDIEIHAKRILAIRDNLNRIL 155          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   V  LV+A+L++L+  DP   I LYINS G         G  + G AIYDTL  ++ +V T+ VG A  M   LLAAG KGKR+ +P+A+IMI QP   + G   A+D+ I A+  M  +++L K+L
Sbjct:   29 RIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPG---------GSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQG--QATDIEIHARRIMNMKESLNKIL 155          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_BDEBA (ATP-dependent Clp protease proteolytic subunit OS=Bdellovibrio bacteriovorus GN=clpP PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL-PASDVLIRAKEAMVNRDTLVKL 815
            RI+ +G  +   V   ++A++++L+  +P+ PI+LYINS G         G  S G AIYD +  +KC+V T  +G A  M  LLL AGTKG R+ +P+ +IMI QP L   GL    +D+ I AKE +  ++ L ++
Sbjct:   39 RIIILGTAVTDEVANSIIAQMLFLEVDNPEKPIHLYINSPG---------GSVSAGLAIYDFMQFVKCDVATYCMGMAASMGSLLLTAGTKGMRYSLPNTRIMIHQPLLSGGGLSGQVTDIEIHAKELVKTKEKLTRI 167          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXD (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAM 788
            RI+ +G P+   V  ++VA+L++L+  DP   I LYINS G         G  + G AIYDT+  +KC V T+ VG A  M  LLL AG KGKR+ +P+++IMI QP   + G   A+D+ I+AKE +
Sbjct:   27 RIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPG---------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQG--QATDIDIQAKEIL 143          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_SYNJA1.526e-2041.43ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_WIGBR1.992e-2037.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_ANASP1.992e-2041.79Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP2_ANAVT1.992e-2041.79ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNJB1.992e-2043.41ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_GLOVI1.992e-2039.13ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_MOOTA2.602e-2040.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNWW3.399e-2041.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BDEBA3.399e-2038.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXD3.399e-2042.97ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
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