FC877913
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.031e-25 Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETT---PQPSELGSSEVDL 631 LD +I++FPTF+YS+VK ++G G +ECAVC+ EFED ETLRL+P+C HVFH +C+ WL H+TCP+CR +L +PGE + P+P + S+ L Sbjct: 68 LDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGERSYLNPEPDLVESTNSHL 165
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.585e-22 Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568 LD E I +FP+FVY++ + ++ G G LEC VCLNEF+DDETLRL+P C HVFH +C+D WL +TCP+CR+ + Sbjct: 57 LDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.779e-21 Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS------ELGSSEVDLEAQNDAAVAAETPQETQPQA-QCSQPPEPQVISGNFAKSNA**EPYTRLKIREGTK 796 L+ +I++FPTF YS VK L+ K LECA+CL EF+ D LRL+ C HVFH ECID W ESH TCPVCR +L P +P+ ++ D E + T +T P + Q S + Q + F++S++ R K E K Sbjct: 82 LELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPTVDEMIIDVIQETSDDEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDK 238
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.175e-19 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 574 +D+ +IDT P F Y + LK+ +C VCL EFE ++ LRL+PKC H FH ECID WL SH+TCP+CRSNL S Sbjct: 100 VDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.845e-19 Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAE 664 LD++ I++ P F +S +K LK G LEC+VCL++FED E LRL+PKC H FH CID WLE H TCP+CR+ + E S LG+S L N + E Sbjct: 99 LDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE-----DDLSVLGNSSTSLRILNQSETREE 196
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 577 +D+ IDT P F Y + LK +CAVCL EFE ++ LRL+PKC H FH +CID WL SH+TCP+CRS+L S+ Sbjct: 108 VDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSD 182
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.357e-18 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568 L+ +I ++P F +S VK L+ K LECA+CL EFE++ L RL+ C HVFH ECID WLES+ TCPVCR NL Sbjct: 86 LEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNL 160
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18 Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG-ETTPQPSELGSSEVDLEAQNDAAVAAE 664 LD VI + P F +SD + K +ECAVCL+EFE+ ET R++P C H FH +CID W SH+TCP+CRS + S G E+T E EV + +D + E Sbjct: 95 LDPNVIKSLPVFTFSD----ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAARE---REVVIAVDSDPVLVIE 194
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17 Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 2 Query: 239 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTF--------------VYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-LASEPGETTPQPSELGSSE 622 MGFFS+Y RH +DSS+S + L V+ + P VY K K + +C +CL++FE+ ET+++IP C HVFH +C+D WL S+ TCP+CRSN L S+ +P + S+E Sbjct: 64 MGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQDSAE 204
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 577 +DR VI++ P F + L K LECAVCL FE E LRL+PKC H FH EC+D WL++H+TCP+CR + E Sbjct: 121 IDRSVIESLPVFRFG---ALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194 The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bpback to top |