FC877913

Overview
NameFC877913
Unique NameFC877913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.031e-25
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETT---PQPSELGSSEVDL 631
            LD  +I++FPTF+YS+VK  ++G G +ECAVC+ EFED ETLRL+P+C HVFH +C+  WL  H+TCP+CR +L  +PGE +   P+P  + S+   L
Sbjct:   68 LDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGERSYLNPEPDLVESTNSHL 165          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.585e-22
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568
            LD E I +FP+FVY++ + ++ G G LEC VCLNEF+DDETLRL+P C HVFH +C+D WL   +TCP+CR+ +
Sbjct:   57 LDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.779e-21
Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS------ELGSSEVDLEAQNDAAVAAETPQETQPQA-QCSQPPEPQVISGNFAKSNA**EPYTRLKIREGTK 796
            L+  +I++FPTF YS VK L+  K  LECA+CL EF+ D  LRL+  C HVFH ECID W ESH TCPVCR +L   P     +P+      ++     D E  +       T  +T P + Q S   + Q +   F++S++      R K  E  K
Sbjct:   82 LELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPTVDEMIIDVIQETSDDEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDK 238          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.175e-19
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 574
            +D+ +IDT P F Y  +  LK+     +C VCL EFE ++ LRL+PKC H FH ECID WL SH+TCP+CRSNL S
Sbjct:  100 VDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.845e-19
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAE 664
            LD++ I++ P F +S +K LK G   LEC+VCL++FED E LRL+PKC H FH  CID WLE H TCP+CR+ +  E        S LG+S   L   N +    E
Sbjct:   99 LDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE-----DDLSVLGNSSTSLRILNQSETREE 196          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 577
            +D+  IDT P F Y  +  LK      +CAVCL EFE ++ LRL+PKC H FH +CID WL SH+TCP+CRS+L S+
Sbjct:  108 VDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSD 182          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.357e-18
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568
            L+  +I ++P F +S VK L+  K  LECA+CL EFE++  L RL+  C HVFH ECID WLES+ TCPVCR NL
Sbjct:   86 LEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNL 160          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG-ETTPQPSELGSSEVDLEAQNDAAVAAE 664
            LD  VI + P F +SD    +  K  +ECAVCL+EFE+ ET R++P C H FH +CID W  SH+TCP+CRS + S  G E+T    E    EV +   +D  +  E
Sbjct:   95 LDPNVIKSLPVFTFSD----ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAARE---REVVIAVDSDPVLVIE 194          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  239 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTF--------------VYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-LASEPGETTPQPSELGSSE 622
            MGFFS+Y RH +DSS+S +                 L   V+ + P                VY   K  K  +   +C +CL++FE+ ET+++IP C HVFH +C+D WL S+ TCP+CRSN L S+      +P +  S+E
Sbjct:   64 MGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQDSAE 204          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 577
            +DR VI++ P F +     L   K  LECAVCL  FE  E LRL+PKC H FH EC+D WL++H+TCP+CR  +  E
Sbjct:  121 IDRSVIESLPVFRFG---ALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194          
The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ATL2F_ARATH2.031e-2551.02RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL4A_ARATH3.585e-2256.76RING-H2 finger protein ATL4A OS=Arabidopsis thalia... [more]
ATL4I_ARATH1.779e-2138.22Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL2C_ARATH2.175e-1955.26Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL2D_ARATH4.845e-1946.23Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]
ATL4K_ARATH3.140e-1853.25RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL5L_ARATH5.357e-1856.00Putative RING-H2 finger protein ATL5L OS=Arabidops... [more]
ATL3F_ARATH6.996e-1843.93RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
ATL2E_ARATH1.193e-1734.97RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL5C_ARATH3.472e-1750.65RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bp
CAACTTTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTATTTT
ACTCCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTC
CTCGTCGCCAACGCGCTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGTC
CCCGGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCG
CCATAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTC
TCCATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCC
CTCCGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCG
ACCGCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAG
ACGCTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGA
GTTCGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCT
TCCACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCC
GTTTGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACC
CAGTGAGCTGGGCTCATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCG
CGGTAGCAGCAGAGACTCCACAAGAAACACAACCACAGGCACAATGTTCA
CAACCACCGGAACCTCAAGTTATCAGCGGCAACTTTGCTAAATCAAACGC
TTAATAAGAACCGTACACGCGGCTCAAGATCCGGGAGGGCACGAAAATTC
CCCCCGGTCTCAC
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