FC877913

Overview
NameFC877913
Unique NameFC877913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877913_ssr83 microsatellite FC877913_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10192 contig Ccv1_Contig10192:48..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  407 KVGKGAL---ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN--LASEP----GETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQ 694
            K G+G +   EC+VCLNEFE+DE+LRL+PKC H FH  CID WL SH  CP+CR+   L +EP     ET  QP    S+  DL  + D++ +        P+AQ
Sbjct:  124 KKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSN--DLRGRQDSSRSRRNHNIFLPRAQ 226          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALE-CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP-------------SELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPP 709
            LD  V++  P FVYS    +K  +  LE C+VCL+EFE+D+  R++PKC HVFH +CID W  S ++CP+CR+ +      T P+P             +E GSS    E+++    ++       P   C + P
Sbjct:   88 LDPTVLEKIPIFVYS----VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFPMEACEREP 218          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 574
            LD+ +ID  P F+Y ++K  K      +CAVCL EF +D+ LRL+P C H FH +CID WL S++TCP+CR  L S
Sbjct:  119 LDQALIDALPVFLYKEIKGTKE---PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  407 KVGKGALE---CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---------SEPGETTP--QPSELGSSEVDLE 634
            K G G +E   C VCLNEFE+DE+LRL+PKC+H FH  CID WL SHT CP+CR+ +A         S P E TP    S L +  VD E
Sbjct:  166 KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLENDGVDEE 255          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDL 631
            LD ++I++FP + YS VK      G  +C++CL EF DD+T+RLI  C+H FH  CID W E H TCPVCR  L  E   +  +P E+   E+DL
Sbjct:  131 LDSKIIESFPEYPYS-VKD----HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEV--PEIDL 218          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 577
            LD+  I++ P F +S +K  K G   L+C+VCL++FE  E LRL+PKC H FH  CID WLE H TCP+CR  ++ E
Sbjct:   98 LDKTAIESLPLFRFSALKGSKQG---LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSME 171          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR-----SNLASEPGETTPQPSELGSSEVD 628
            LD+  ID  P F+Y +V T+ + +   +CAVCLNEF D + LRL+P C H FH  CID WL S++TCP+CR     SN+     ET   P   G  +VD
Sbjct:  181 LDQTAIDALPVFLYGNV-TISLEQ-PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNVCYNHSETLVAPLS-GHQQVD 276          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = 2
Query:  245 FFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--------ASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQVI 724
            F+ IY+R  S   +S+                  L +E+ +  P  V+ +  T+       +C+VCL +++ ++ L+ IP C H FH +CID WL SHTTCP+CR  L          +P  +   P E  SS+ + E  N   V+ +   E    +  S  PE Q +
Sbjct:   42 FYLIYLRRSSSDLSSLGMRTTFIPGNSLSTIELGLSKELREMLPIVVFKESFTVMDS----QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPV 205          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGK-------GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 607
            +D EV+ + P  VYS        K         +ECAVCL E ED E  R +P+C H FH EC+D WL SH+TCP+CR  +   P    P P E
Sbjct:   99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPE 192          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVD-LEAQNDAAVAAETPQETQPQAQCSQPPEPQVISGNFAK 742
            L+  +I + P F +S V  L     A+EC+VCL+EF+D+E+ R++P C H FH  CID W  SH++CP+CRS +    G       E+  S  D +    +     ET  ++ P+    +P   ++   N  +
Sbjct:   52 LNPSIIKSLPIFTFSAVTALF----AMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQRKPAAIEISQRNLGE 180          
The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ATL5F_ARATH5.923e-1745.71RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL3L_ARATH5.923e-1734.81RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
ATL1D_ARATH5.923e-1750.00RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL1O_ARATH7.735e-1751.11RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL1F_ARATH7.735e-1746.32RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL4J_ARATH1.010e-1650.65RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL3I_ARATH2.939e-1645.45RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL1G_ARATH8.552e-1629.17RING-H2 finger protein ATL1G OS=Arabidopsis thalia... [more]
EL5_ORYSJ1.117e-1542.55E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL4G_ARATH1.459e-1532.33RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bp
CAACTTTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTATTTT
ACTCCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTC
CTCGTCGCCAACGCGCTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGTC
CCCGGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCG
CCATAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTC
TCCATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCC
CTCCGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCG
ACCGCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAG
ACGCTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGA
GTTCGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCT
TCCACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCC
GTTTGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACC
CAGTGAGCTGGGCTCATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCG
CGGTAGCAGCAGAGACTCCACAAGAAACACAACCACAGGCACAATGTTCA
CAACCACCGGAACCTCAAGTTATCAGCGGCAACTTTGCTAAATCAAACGC
TTAATAAGAACCGTACACGCGGCTCAAGATCCGGGAGGGCACGAAAATTC
CCCCCGGTCTCAC
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