FC877913
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17 Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 2 Query: 407 KVGKGAL---ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN--LASEP----GETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQ 694 K G+G + EC+VCLNEFE+DE+LRL+PKC H FH CID WL SH CP+CR+ L +EP ET QP S+ DL + D++ + P+AQ Sbjct: 124 KKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSN--DLRGRQDSSRSRRNHNIFLPRAQ 226
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17 Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALE-CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP-------------SELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPP 709 LD V++ P FVYS +K + LE C+VCL+EFE+D+ R++PKC HVFH +CID W S ++CP+CR+ + T P+P +E GSS E+++ ++ P C + P Sbjct: 88 LDPTVLEKIPIFVYS----VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFPMEACEREP 218
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17 Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 574 LD+ +ID P F+Y ++K K +CAVCL EF +D+ LRL+P C H FH +CID WL S++TCP+CR L S Sbjct: 119 LDQALIDALPVFLYKEIKGTKE---PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17 Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 2 Query: 407 KVGKGALE---CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---------SEPGETTP--QPSELGSSEVDLE 634 K G G +E C VCLNEFE+DE+LRL+PKC+H FH CID WL SHT CP+CR+ +A S P E TP S L + VD E Sbjct: 166 KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLENDGVDEE 255
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17 Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDL 631 LD ++I++FP + YS VK G +C++CL EF DD+T+RLI C+H FH CID W E H TCPVCR L E + +P E+ E+DL Sbjct: 131 LDSKIIESFPEYPYS-VKD----HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEV--PEIDL 218
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 577 LD+ I++ P F +S +K K G L+C+VCL++FE E LRL+PKC H FH CID WLE H TCP+CR ++ E Sbjct: 98 LDKTAIESLPLFRFSALKGSKQG---LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSME 171
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16 Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR-----SNLASEPGETTPQPSELGSSEVD 628 LD+ ID P F+Y +V T+ + + +CAVCLNEF D + LRL+P C H FH CID WL S++TCP+CR SN+ ET P G +VD Sbjct: 181 LDQTAIDALPVFLYGNV-TISLEQ-PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNVCYNHSETLVAPLS-GHQQVD 276
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16 Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = 2 Query: 245 FFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--------ASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQVI 724 F+ IY+R S +S+ L +E+ + P V+ + T+ +C+VCL +++ ++ L+ IP C H FH +CID WL SHTTCP+CR L +P + P E SS+ + E N V+ + E + S PE Q + Sbjct: 42 FYLIYLRRSSSDLSSLGMRTTFIPGNSLSTIELGLSKELREMLPIVVFKESFTVMDS----QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPV 205
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15 Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGK-------GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 607 +D EV+ + P VYS K +ECAVCL E ED E R +P+C H FH EC+D WL SH+TCP+CR + P P P E Sbjct: 99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPE 192
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15 Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVD-LEAQNDAAVAAETPQETQPQAQCSQPPEPQVISGNFAK 742 L+ +I + P F +S V L A+EC+VCL+EF+D+E+ R++P C H FH CID W SH++CP+CRS + G E+ S D + + ET ++ P+ +P ++ N + Sbjct: 52 LNPSIIKSLPIFTFSAVTALF----AMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQRKPAAIEISQRNLGE 180 The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bpback to top |