FC877913

Overview
NameFC877913
Unique NameFC877913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877913_ssr83 microsatellite FC877913_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10192 contig Ccv1_Contig10192:48..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 619
            LD+ V+D  P FVYS  K     +   EC+VCL+EFE+++  RL+PKC H FH +CID W  S +TCP+CR+     P +   Q  E GSS
Sbjct:   81 LDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRA-----PVQPPFQVIETGSS 165          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 583
            LD  +I +FP F YS       G    ECA+CL+EF D++T+RLI  C H FH  CID W E H TCPVCR  L  +PG
Sbjct:   78 LDPFIIRSFPVFHYSSATKKNHGT---ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCEL--DPG 151          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGA-------LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 601
            LD+  ID  P F Y ++     G G         +CAVCL EF + + LRL+P C H FH  CID WL+S++TCP+CR  L S PG +   P
Sbjct:  108 LDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFS-PGFSMENP 198          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3J_ARATH (RING-H2 finger protein ATL3J OS=Arabidopsis thaliana GN=ATL3J PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  359 VIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 619
            V+D+ P F +S V        + +CAVCL++FE ++ LRL+P C H FH +CID WL S+ TCP+CRS L +   +     + +GS+
Sbjct:   93 VLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSN 179          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLK----VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQVISG 730
            LD   I   P F +     +       K + EC+VCLNEF++DE LR+IP C HVFH +CID WL+ +  CP+CR++++ E   T                  D   A  +P+E  P ++ ++  EP ++ G
Sbjct:  102 LDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTL-----------------DLISAPSSPRENSPHSR-NRNLEPGLVLG 215          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  347 LDREVIDTFPTFV----YSDVKTLKVGKG-------ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---SEPGETTPQPSELGSSEVDLEAQNDAAV 655
            LD  VI   P F     Y     +  G+G       + EC+VCL+EF+D+E LR+IP C H+FH +CID WL+++  CP+CR+ ++   S P +    PS    + V L  +N+  V
Sbjct:   99 LDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVMLRGENEYVV 215          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTL---KVGKGAL----ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 595
            LD  VI T P F+YS         VGK +     +CAVCL EFE+ + +R +P C H FH ECID WL SH  CP+CR+ +    G  TP
Sbjct:  121 LDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGVLTP 210          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  416 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQND 646
            K  LEC VCL+E  D +  R++P CDH FH ECID+WL+S++TCP+CR  +  +   T P   ELG  +      +D
Sbjct:   83 KYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRP---ELGGRDKSFNQNHD 156          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568
            +D+  ID  P   Y  +  L+      +CAVCL EF  ++ LRL+PKC H FH ECID WL +++TCP+CR NL
Sbjct:   96 IDQSFIDALPLLHYKTMIGLR--HDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNL 167          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG-ETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQA 691
            L +++ +  P  +Y +   +K      +C+VCL +++ +E L+ +P C H FH ECID WL SHTTCP+CR +L  +P  + + Q +E+ SS   +E  N    + +   ++  +A
Sbjct:   87 LSKDIREMLPVVIYKESFIVKDS----QCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSS---IENSNGGEASTQPDSQSATEA 195          
The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ATL2N_ARATH1.905e-1546.15RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]
ATL2H_ARATH2.488e-1550.63RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL5I_ARATH3.250e-1543.48RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL3J_ARATH3.250e-1541.38RING-H2 finger protein ATL3J OS=Arabidopsis thalia... [more]
ATL1A_ARATH3.250e-1533.33RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5K_ARATH7.240e-1536.75RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL3G_ARATH7.240e-1545.56RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
ATL3E_ARATH1.613e-1444.16Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
ATL5N_ARATH2.106e-1447.30Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL4E_ARATH2.106e-1432.76RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bp
CAACTTTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTATTTT
ACTCCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTC
CTCGTCGCCAACGCGCTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGTC
CCCGGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCG
CCATAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTC
TCCATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCC
CTCCGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCG
ACCGCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAG
ACGCTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGA
GTTCGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCT
TCCACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCC
GTTTGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACC
CAGTGAGCTGGGCTCATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCG
CGGTAGCAGCAGAGACTCCACAAGAAACACAACCACAGGCACAATGTTCA
CAACCACCGGAACCTCAAGTTATCAGCGGCAACTTTGCTAAATCAAACGC
TTAATAAGAACCGTACACGCGGCTCAAGATCCGGGAGGGCACGAAAATTC
CCCCCGGTCTCAC
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