FC877913

Overview
NameFC877913
Unique NameFC877913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877913_ssr83 microsatellite FC877913_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10192 contig Ccv1_Contig10192:48..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  428 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 601
            +C++CL EF +DE+LRL+PKC+H FH  CID WL+SH+ CP+CR+ +      TT QP
Sbjct:  180 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV---PTTQQP 234          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2K_ARATH (RING-H2 finger protein ATL2K OS=Arabidopsis thaliana GN=ATL2K PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 607
            LD  VI + PTFV      +K      ECAVCL+  E+ +  R++P C HVFH  C+D WL + +TCPVCR+          P+P E
Sbjct:   76 LDSLVIASLPTFVVG----IKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPRE 158          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG-ETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQA 691
            L +++ +  P  +Y +  T+       +C+VCL +++ +E L+ +P C H FH ECID WL SHTTCP+CR +L  +P  + + Q  E+ SS   +E  N    + +   ++  +A
Sbjct:   73 LSKDIREMLPIVIYKESFTVN----DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSS---IENTNGGEASTQPDSQSATEA 181          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  428 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG---------ETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQ 718
            +C+VCL+EF+++E+LRL+PKC+H FH  CID WL+SH+ CP+CR+ + +            +   + + + + +  +   N     + +  ET  +    +PPE Q
Sbjct:  158 DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQ 263          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14
Identity = 28/45 (62.22%), Postives = 40/45 (88.89%), Query Frame = 2
Query:  428 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 562
            +C+VCL+EFE++E+LRL+PKC+H FH  CID WL+SH+ CP+CR+
Sbjct:  141 DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  368 TFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 589
            T PT VYS    L++     ECA+CL+EFE  E+++++ KC H FH +CI  WL + ++CP CR+++ S+  ET
Sbjct:   88 TTPTLVYSS--DLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSET 159          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDL 631
            LDR VI+++P  V  D + L        C++CL ++E  E +R IP+C+H FH +C+D WL +  TCP+CR+         +P PS L +   DL
Sbjct:   67 LDRPVIESYPRIVLGDSRRLPRPNNG-PCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRN---------SPAPSRLATPLSDL 151          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.188e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYS-DVKTLKVGKGALE-------CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSEL 610
            LD  VI+++P F ++ D+  +  G G  +       C++CL E+ ++E LR++P+C H FH  C+DAWL+ + +CPVCR++    P ++TPQ + L
Sbjct:  100 LDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTP-QSTPQSTPL 194          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.188e-13
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  416 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQN-DAAVAAETPQETQPQAQCSQPPEP 715
            K  LEC++CL+E    +  RL+PKC+H FH ECID W +SH+TCP+CR+        T   P +  S  V+    N + A       +   Q   S P  P
Sbjct:  122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRN--------TVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFP 214          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.776e-13
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  347 LDREVIDTFPTFVY-SDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVD 628
            L ++ +   P  +Y S +  +K    A EC +CL +FED E +R++PKC+H FH  CID WL S ++CP CR +L  E      QPS +  S  D
Sbjct:   89 LKKQALKQIPVGLYGSGIIDMK----ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLE------QPSPMAVSRRD 173          
The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ATL4H_ARATH4.693e-1453.45Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL2K_ARATH4.693e-1441.38RING-H2 finger protein ATL2K OS=Arabidopsis thalia... [more]
ATL4F_ARATH6.129e-1432.76RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL3A_ARATH6.129e-1432.08RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL5G_ARATH8.005e-1462.22Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL5M_ARATH2.329e-1343.24RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
ATL5E_ARATH3.042e-1337.89Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]
ATL3K_ARATH5.188e-1337.50RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL1P_ARATH5.188e-1336.63RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL3C_ARATH6.776e-1340.00RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bp
CAACTTTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTATTTT
ACTCCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTC
CTCGTCGCCAACGCGCTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGTC
CCCGGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCG
CCATAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTC
TCCATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCC
CTCCGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCG
ACCGCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAG
ACGCTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGA
GTTCGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCT
TCCACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCC
GTTTGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACC
CAGTGAGCTGGGCTCATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCG
CGGTAGCAGCAGAGACTCCACAAGAAACACAACCACAGGCACAATGTTCA
CAACCACCGGAACCTCAAGTTATCAGCGGCAACTTTGCTAAATCAAACGC
TTAATAAGAACCGTACACGCGGCTCAAGATCCGGGAGGGCACGAAAATTC
CCCCCGGTCTCAC
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