FC877913
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12 Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKV-----GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 589 LD+ VI+++P F +S + G G C++CL E+++ E LR++P+C H FH C+DAWL+ + +CPVCR++ P T Sbjct: 105 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 559 + ++ + FP YS L G G EC +CL++F E LRL+PKC+H FH CID WL+ H TCP CR Sbjct: 109 IKKKALRMFPVVSYSREMNLP-GIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 559 ++++ + FP YS L G G EC +CL++F E +R++PKC H FH CID WL+ H TCP CR Sbjct: 110 INKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12 Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 2 Query: 350 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQVIS 727 D+E I PT ++ VG G LEC VC +++ E +R +P C+H+FH CI WLE H +CPVCR +L + T P G + V + + ++ ++ E + +P P+ +S Sbjct: 206 DKEKIQALPTVPVTEEH---VGSG-LECPVCKDDYALGERVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPP----GLTGVSFSSSSSSSSSSSPSNENATWSPLGRPQPPRPLS 322
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12 Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 398 KTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 571 + L V + ECAVCL + E ++ RL+P C+H FH C D WL +HT CPVCR+ LA Sbjct: 93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELA 150
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11 Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 2 Query: 353 REVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--ASEPGETTPQPSELGSSE 622 R+ + +F T YS L + ECA+CL+EF +E ++L+P C H FH CID WL SH++CP CR L E Q S L S++ Sbjct: 107 RKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 196
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11 Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 589 L EVI FP Y + + K C++CL +++ + +R++P C+H+FH C+D WL H TCPVCR++ P T Sbjct: 97 LTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMT 181
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568 L ++V+ + P YS + +ECA+CL EF + LR++P+C H FH CID WL SH++CP CR L Sbjct: 78 LKKKVLRSLPKLTYSPDSP--PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11 Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 2 Query: 350 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 619 D+E I + PT V +V G LEC VC ++ +E +R +P C+H FH CI WLE H TCPVCR +L E Q SE +S Sbjct: 206 DKEKITSLPTVT---VTQEQVNTG-LECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASAS 290
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11 Identity = 42/134 (31.34%), Postives = 62/134 (46.27%), Query Frame = 2 Query: 347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQ-NDAAVAAETP----QETQPQAQCSQPPEPQVISG 730 L +E + PT Y V CA+CL+E+ED + LR++P C H +H C+D WL ++ TCP+C+ + PG+ + G E E + D + TP T P + S P P V G Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDV------CAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQGQEEEGDEGEPRDQPASEWTPLLGSSPTLPTSFGSLAPAPLVFPG 334 The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bpback to top |