FC877913

Overview
NameFC877913
Unique NameFC877913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKV-----GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 589
            LD+ VI+++P F +S   +        G G   C++CL E+++ E LR++P+C H FH  C+DAWL+ + +CPVCR++    P  T
Sbjct:  105 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 559
            + ++ +  FP   YS    L  G G  EC +CL++F   E LRL+PKC+H FH  CID WL+ H TCP CR
Sbjct:  109 IKKKALRMFPVVSYSREMNLP-GIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 559
            ++++ +  FP   YS    L  G G  EC +CL++F   E +R++PKC H FH  CID WL+ H TCP CR
Sbjct:  110 INKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  350 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAVAAETPQETQPQAQCSQPPEPQVIS 727
            D+E I   PT   ++     VG G LEC VC +++   E +R +P C+H+FH  CI  WLE H +CPVCR +L  +   T P     G + V   + + ++ ++    E    +   +P  P+ +S
Sbjct:  206 DKEKIQALPTVPVTEEH---VGSG-LECPVCKDDYALGERVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPP----GLTGVSFSSSSSSSSSSSPSNENATWSPLGRPQPPRPLS 322          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 2
Query:  398 KTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 571
            + L V   + ECAVCL + E  ++ RL+P C+H FH  C D WL +HT CPVCR+ LA
Sbjct:   93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELA 150          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  353 REVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--ASEPGETTPQPSELGSSE 622
            R+ + +F T  YS    L +     ECA+CL+EF  +E ++L+P C H FH  CID WL SH++CP CR  L    E      Q S L S++
Sbjct:  107 RKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 196          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 589
            L  EVI  FP   Y + +      K       C++CL +++  + +R++P C+H+FH  C+D WL  H TCPVCR++    P  T
Sbjct:   97 LTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMT 181          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 568
            L ++V+ + P   YS        +  +ECA+CL EF   + LR++P+C H FH  CID WL SH++CP CR  L
Sbjct:   78 LKKKVLRSLPKLTYSPDSP--PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  350 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 619
            D+E I + PT     V   +V  G LEC VC  ++  +E +R +P C+H FH  CI  WLE H TCPVCR +L  E      Q SE  +S
Sbjct:  206 DKEKITSLPTVT---VTQEQVNTG-LECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASAS 290          
BLAST of FC877913 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 42/134 (31.34%), Postives = 62/134 (46.27%), Query Frame = 2
Query:  347 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQ-NDAAVAAETP----QETQPQAQCSQPPEPQVISG 730
            L +E +   PT  Y       V      CA+CL+E+ED + LR++P C H +H  C+D WL ++  TCP+C+  +   PG+   +    G  E   E +  D   +  TP      T P +  S  P P V  G
Sbjct:  208 LTKEQLKQIPTHDYQKGDEYDV------CAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQGQEEEGDEGEPRDQPASEWTPLLGSSPTLPTSFGSLAPAPLVFPG 334          
The following BLAST results are available for this feature:
BLAST of FC877913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ATL2M_ARATH5.737e-1238.37RING-H2 finger protein ATL2M OS=Arabidopsis thalia... [more]
ATL1J_ARATH5.737e-1246.48RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL1I_ARATH7.492e-1243.66RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
RN126_HUMAN9.785e-1231.75RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
ATL5J_ARATH9.785e-1250.00RING-H2 finger protein ATL5J OS=Arabidopsis thalia... [more]
ATL1L_ARATH1.278e-1140.22RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL5D_ARATH1.669e-1135.29Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]
ATL1R_ARATH2.180e-1141.89RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
RN115_MOUSE2.847e-1142.22RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RN167_RAT4.856e-1131.34E3 ubiquitin-protein ligase RNF167 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877913 ID=FC877913; Name=FC877913; organism=Citrus clementina; type=EST; length=813bp
CAACTTTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTATTTT
ACTCCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTC
CTCGTCGCCAACGCGCTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGTC
CCCGGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCG
CCATAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTC
TCCATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCC
CTCCGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCG
ACCGCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAG
ACGCTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGA
GTTCGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCT
TCCACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCC
GTTTGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACC
CAGTGAGCTGGGCTCATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCG
CGGTAGCAGCAGAGACTCCACAAGAAACACAACCACAGGCACAATGTTCA
CAACCACCGGAACCTCAAGTTATCAGCGGCAACTTTGCTAAATCAAACGC
TTAATAAGAACCGTACACGCGGCTCAAGATCCGGGAGGGCACGAAAATTC
CCCCCGGTCTCAC
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