FC877915

Overview
NameFC877915
Unique NameFC877915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length927
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.015e-18
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            ++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+E
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.015e-18
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            ++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+E
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.731e-18
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            +KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLL+ AE
Sbjct:   75 TKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAE 123          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.122e-17
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 PSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            P+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDGET+EWLLQ AE
Sbjct:   67 PNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.610e-16
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            S DRH+KV GRGRR+R+PA+ AARVFQLTRELGH++DGETIEWLL+QAE
Sbjct:   56 SSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAE 104          
BLAST of FC877915 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.715e-16
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    4 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 150
            +KDRHTKV+GR RR+ MPA+ AAR+FQLTRELGHK++GETIEWLL QAE
Sbjct:   43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91          
The following BLAST results are available for this feature:
BLAST of FC877915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PCF2_ORYSJ1.015e-1885.71Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI1.015e-1885.71Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
TCP9_ARATH1.731e-1885.71Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP6_ARATH1.122e-1776.00Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
PCF1_ORYSJ3.610e-1679.59Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP11_ARATH4.715e-1677.55Transcription factor TCP11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877915 ID=FC877915; Name=FC877915; organism=Citrus clementina; type=EST; length=927bp
CCGTCTAAGGACCGGCACACCAAAGTGGACGGCCGGGGGCGACGGATACG
GATGCCGGCAGTATGTGCAGCTAGGGTTTTCCAGTTAACAAGAGAATTAG
GGCACAAATCAGATGGTGAAACCATTGAGTGGCTGCTGCAACAAGCTGAG
CCTGCCATTATAGCTACCACGGGCACCGGCACCATTCCTGCTAATTTTTC
AACTCTTAATATTTCTTTACGTAGCAGCGGCAGCTCCTCTCTTTCAGCGC
CCGCTTCTAAATCATCACTCCACAGCGCCGCCGCCGCTTTAGCACTTTAC
AACAACACCACCAACAACAACATTAATAGTGGAGGTTTTTTTTGTGGGGC
GTTTCAGCAGCAGCAACAATTGTTGTATAATATTCCTGAAACAGCGGCTG
CAACAGCAAGTGCTTGTGCTTCTTCATCTTCTTCTTCTTCTTCTGCTTCA
GCAGCTGCTGCCGTGGCGGCACCTGCAGCTGCTATGTGGGCAGTGGCACC
GGCTGCTGCTTCTAATGGGGGCAACGGCTTCTGGATGCTACCGGAGGCAC
AGATGTGGACTTTTCCCGCTCATTATTCGGGTCTAGGCCGGCTGAGTTCT
GTTCAAATGGGCGGTCATCAGCAGCAGCTGGGAGTAGGAGTTCTTGCAGA
GAGTCTCAATAATAACATGGGCGTTTTGGGTGGTGGCGTTGGCTCTAATA
ATGCTTATAGAGCTCCTGGTTTGGCCATGAATATTTTTGGTCAAAATCAT
CAAGAANATAATAATGATAACGATAATAATAACAATAATAATCAGCAGAC
TACTCAAGCCAGTAATAGCGGAGATGAAGAGTCTTAATAATTATATTAAT
CATTTATATGCTTTATTTTTCTCAGTGCTTGTAAATGTTTTTTTTTTCCT
TTCTCTTTACTTTTACCTAAGGCTAGC
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