FC877926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.136e-26 Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 2 Query: 65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 E ++IP+GV+V + ++V+GP+G++ R+ + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+ +L GVTV KVK E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.116e-26 Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 2 Query: 65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 E ++IP+GV+V + ++V+GP+G+L R+F + E G + D F RK A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + IE NFLGEK RK +L GVTV KV+ E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.084e-25 Identity = 66/178 (37.08%), Postives = 105/178 (58.99%), Query Frame = 2 Query: 71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 +DIPDGV V+I+ + + V+GP+G+LSR+ + +++ + K+ I + ++ A + T +H+ N+I GVT G+ Y+MR VY+HFPI + + AI NFLGE+K R ++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ EK Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.028e-25 Identity = 63/180 (35.00%), Postives = 108/180 (60.00%), Query Frame = 2 Query: 71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 +++P GV V ++ + +G +G++SR+F+ + + TDG K+ ++ ++T A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R +++ V ++ DKV VL G + E + ++AA I Q C ++ +D R F DGIY++ K+ Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGG----KVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.261e-25 Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 2 Query: 56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 L E ++IP+ V V++N + V+ +L RD + ++ T K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.261e-25 Identity = 69/184 (37.50%), Postives = 102/184 (55.43%), Query Frame = 2 Query: 56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 L E ++IP+ V V+IN + V+ +L RD + ++ T K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.531e-24 Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 2 Query: 65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 E ++IP+GV+V + ++V+GP+G++ + + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+ +L GVTV KVK E++++G D E ++AA I Q + D R F DGIY+ EK+ Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24 Identity = 59/190 (31.05%), Postives = 107/190 (56.32%), Query Frame = 2 Query: 44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613 +K E + IPD VKV + V++V+GP+G++ +DF + + +G K+ ++ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N +GEK +R+ +L GV V +++V++G+DI V+++AA I + D R F DGIY+ +K I Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24 Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 2 Query: 56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 L E ++IP+ V V+IN + V+ +L R+ + ++ T K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +++V+ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.817e-24 Identity = 70/184 (38.04%), Postives = 103/184 (55.98%), Query Frame = 2 Query: 56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 L E + IPDGV V I+ V V+GP+ +LSR F H + + D K+ ++ F +K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NFLGE+ R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY+ K Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176 The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bpback to top |