FC877926

Overview
NameFC877926
Unique NameFC877926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:34..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.136e-26
Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 2
Query:   65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            E ++IP+GV+V +    ++V+GP+G++ R+     +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.116e-26
Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 2
Query:   65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            E ++IP+GV+V +    ++V+GP+G+L R+F    +        E G   +  D  F  RK  A  RT  +H+ N+I GVT+G+ YK++ VY+HFPI+  +  +   IE  NFLGEK  RK  +L GVTV    KV+  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.084e-25
Identity = 66/178 (37.08%), Postives = 105/178 (58.99%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            +DIPDGV V+I+ + + V+GP+G+LSR+  + +++       +    K+ I +    ++  A + T  +H+ N+I GVT G+ Y+MR VY+HFPI   + +   AI   NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY+ EK
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.028e-25
Identity = 63/180 (35.00%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            +++P GV V ++   +  +G +G++SR+F+   +   + TDG     K+ ++     ++T A + T  SH+ N++TGV++GY Y M+ VYAHFPI   +   +K + I NFLGE+K R  +++    V ++ DKV    VL G + E + ++AA I Q C ++ +D R F DGIY++ K+
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGG----KVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.261e-25
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            L  E ++IP+ V V++N   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.261e-25
Identity = 69/184 (37.50%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            L  E ++IP+ V V+IN   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.531e-24
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            E ++IP+GV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E   ++AA I Q   +   D R F DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 59/190 (31.05%), Postives = 107/190 (56.32%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 613
            +K     E + IPD VKV +   V++V+GP+G++ +DF +       + +G     K+ ++  F  R+  A + + ++H+ N+ITG   GYRY ++ +  HFPI+  +  +   +++ N +GEK +R+  +L GV V       +++V++G+DI  V+++AA I     +   D R F DGIY+ +K  I
Sbjct:    4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            L  E ++IP+ V V+IN   + V+    +L R+  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.817e-24
Identity = 70/184 (38.04%), Postives = 103/184 (55.98%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            L  E + IPDGV V I+  V  V+GP+ +LSR F H  +   +  D      K+ ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +  +   IE  NFLGE+  R    +    V    +VK DE+ + G + E V ++ A I Q   +K +D R F DGIY+  K
Sbjct:    6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176          
The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_PYRAB2.136e-2639.0150S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]
RL6_PYRFU8.116e-2639.5650S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_METTP3.084e-2537.0850S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_UNCMA4.028e-2535.0050S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_METM75.261e-2536.9650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM55.261e-2537.5050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_PYRHO1.531e-2437.9150S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_SULAC3.410e-2431.0550S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_METMP3.410e-2436.9650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METTH5.817e-2438.0450S ribosomal protein L6P OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bp
CGTATGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGGAAAATGAAGA
CAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAG
ATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCG
CGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGGGGAAA
CCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACC
AGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGG
TGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTC
CCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAAC
TTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTGATGGTGTTAC
CGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATG
ACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCAT
GTGAAGAACAAGGACATTAGGAAATTTCTTGATGGGATCTATGTCAGTGA
GAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTTCGAATTTTCTT
GTCATAGTAATGTTATGAATTTTTTTTTAAATCTTTTTAATTTTGCCTCT
TACTTTGAGTTGAGGACATGCTTTTGGTTGTATTTGGGATTTGGGACTTG
GGAGTTCTAGATTTCAATTTTATGTCTTCAATTGCTATCATCACAATATA
TGTATGGATTTTATAGCTATGCATCTGGCATTTTTGATCTTTTATCTACC
TCTTGAATAATCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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