FC877926

Overview
NameFC877926
Unique NameFC877926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:34..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.597e-24
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            L  E ++IP  V V+IN   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.597e-24
Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            + IP GV V ++  V+ V+GP+G L RD  +  ++  +      G   ++       +  ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    + +EI NFLGEK  R   +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY+  +S
Sbjct:    7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 66/181 (36.46%), Postives = 103/181 (56.91%), Query Frame = 2
Query:   65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            E + IP+ V+V+IN   + V+    +L R F+H  +      D      ++ I   +  RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+  N   IE  NFLGEK  R+  +++GVTV  S    +++++ G D E V ++AA I Q   +K +D R F DGIY+ EK+
Sbjct:    9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGD------EIVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.887e-23
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 2
Query:   65 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            E ++IP+GV+V IN   + V+GP G+ SR F + N+D   +T+ E     + ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   +  N   + I NFLGE+  R   ++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+  K
Sbjct:    9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.444e-22
Identity = 65/182 (35.71%), Postives = 103/182 (56.59%), Query Frame = 2
Query:   62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            + T++IP+GV V ++  V   +GP+G + R F +  +        E  + ++ +DA    ++  A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NFLGEKK R   +L G T ++     +E+V+ G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:    6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKI------EVREGEVVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.286e-22
Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            L  E ++IP  V V++N   + V+     L R+     ++  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.286e-22
Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            L  E ++IP  V V++N   + V+     L R+     ++  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.609e-21
Identity = 62/182 (34.07%), Postives = 105/182 (57.69%), Query Frame = 2
Query:   65 ETMDIPDGVKVK-INAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            E ++IP+ V ++ IN + + V+    +L R   + ++        +    K+ +++ +  +K +A I T  SH+ N+ITGV++G+ YKM+  YAHFP+  S+  N   I+  NFLGEK  RK  +++GV V  S    +++++ G D E   ++AA I Q   V+ +D R F DGIY+ EK+
Sbjct:    9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDVVI------KKEDNKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.019e-21
Identity = 61/178 (34.27%), Postives = 95/178 (53.37%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            + IP+GV V     V+   GP+G  +R   +  ++       E    ++ +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +  N K   I NFLGEKK R  ++L   +V  S    DE+++ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.861e-21
Identity = 62/183 (33.88%), Postives = 98/183 (53.55%), Query Frame = 2
Query:   62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            +E + IP+ V V IN   + V+G  G++ R+F H  +           +  + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  RK  ++ D V V     VK +++ + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:    8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKITI------SNDEENVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METM67.597e-2436.9650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METHJ7.597e-2436.1150S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METJA1.296e-2336.4650S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_METS32.887e-2335.5650S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METMA2.444e-2235.7150S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_METVS9.286e-2233.5150S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA9.286e-2233.5150S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_META34.609e-2134.0750S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_METBU6.019e-2134.2750S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_METST7.861e-2133.8850S ribosomal protein L6P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bp
CGTATGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGGAAAATGAAGA
CAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAG
ATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCG
CGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGGGGAAA
CCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACC
AGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGG
TGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTC
CCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAAC
TTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTGATGGTGTTAC
CGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATG
ACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCAT
GTGAAGAACAAGGACATTAGGAAATTTCTTGATGGGATCTATGTCAGTGA
GAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTTCGAATTTTCTT
GTCATAGTAATGTTATGAATTTTTTTTTAAATCTTTTTAATTTTGCCTCT
TACTTTGAGTTGAGGACATGCTTTTGGTTGTATTTGGGATTTGGGACTTG
GGAGTTCTAGATTTCAATTTTATGTCTTCAATTGCTATCATCACAATATA
TGTATGGATTTTATAGCTATGCATCTGGCATTTTTGATCTTTTATCTACC
TCTTGAATAATCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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