FC877926

Overview
NameFC877926
Unique NameFC877926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:34..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20
Identity = 64/185 (34.59%), Postives = 101/185 (54.59%), Query Frame = 2
Query:   62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607
            + T++IP+GV V +   V    GP+G + R   +  +    M D + G+  + +DA +  ++  A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NFLGEKK R         +I   KVK   +++ + G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:    6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20
Identity = 58/178 (32.58%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            ++IPD V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  R+  +     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.287e-20
Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 2
Query:   56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            ++   ++IP+ V  +++   + VEGP G ++R   + ++   +  D +     ++ D      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDET--DAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.287e-20
Identity = 62/178 (34.83%), Postives = 101/178 (56.74%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            ++IP+ V  + +   I VEG  G ++R   + ++D  +  DG+T    + I++   + KT + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NFLGEK  R+   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct:    6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.483e-19
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 2
Query:   71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 601
            ++IPD V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NFLGEK  RK   + G T +  D   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19
Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 2
Query:   77 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 607
            IP+ VKV     +++V GP+G++ R F      +H +        K+ ++ +F +R+    I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NFLGEK   ++++  LD V V I  +K + E+V++  D E     A++I Q      K KD R+F DGI++  K+
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 2
Query:   53 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            +     +++P+ V++ I         ++  GP+G+ +R  K+  +        E G  K+++      +K  A + T   H+ NLITGV +G+ Y ++ VYAHFPI   +  N   IE  NF+GEK  R+  ++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY+ +K
Sbjct:   18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.769e-18
Identity = 61/179 (34.08%), Postives = 98/179 (54.75%), Query Frame = 2
Query:   71 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            ++IP+G+ V  +   V    GP G + R   +  +  ++  DGE     +++DA    ++  A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NFLGEKK R   +L G T ++     +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.135e-18
Identity = 55/191 (28.80%), Postives = 107/191 (56.02%), Query Frame = 2
Query:   53 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            I+  E + I D V+++I+ +      + V+GP+G+++++F +   D +L  + +    ++ I A   +R+  A +    +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF+GE   R  +++D     VI   +   ++++ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.534e-16
Identity = 55/169 (32.54%), Postives = 95/169 (56.21%), Query Frame = 2
Query:   44 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 535
            M+ + S E ++IP GV V I        +++V+GP G+++++FK+  +   L  DG     K+ ++ +   ++  A + T    + N+  GVT+G+RYK++ +Y HFP+   +  N   IE  NFLG K    +++  GV V    K K+++V++G D ELVS  AA +
Sbjct:    1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQ-DG-----KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159          
The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METAC1.341e-2034.5950S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_HALSA1.341e-2032.5850S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_HALWD2.287e-2034.7650S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_HALMA2.287e-2034.8350S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_NATPD1.483e-1936.1650S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_NANEQ3.303e-1931.3250S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_ARCFU1.255e-1830.6950S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_METBF4.769e-1834.0850S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_METKA8.135e-1828.8050S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_PYRAE1.534e-1632.5450S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bp
CGTATGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGGAAAATGAAGA
CAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAG
ATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCG
CGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGGGGAAA
CCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACC
AGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGG
TGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTC
CCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAAC
TTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTGATGGTGTTAC
CGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATG
ACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCAT
GTGAAGAACAAGGACATTAGGAAATTTCTTGATGGGATCTATGTCAGTGA
GAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTTCGAATTTTCTT
GTCATAGTAATGTTATGAATTTTTTTTTAAATCTTTTTAATTTTGCCTCT
TACTTTGAGTTGAGGACATGCTTTTGGTTGTATTTGGGATTTGGGACTTG
GGAGTTCTAGATTTCAATTTTATGTCTTCAATTGCTATCATCACAATATA
TGTATGGATTTTATAGCTATGCATCTGGCATTTTTGATCTTTTATCTACC
TCTTGAATAATCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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