FC877926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20 Identity = 64/185 (34.59%), Postives = 101/185 (54.59%), Query Frame = 2 Query: 62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 607 + T++IP+GV V + V GP+G + R + + M D + G+ + +DA + ++ A + T SH+ NL+ GV +G+ KM VYAHFP+ + + K + I NFLGEKK R +I KVK +++ + G + E V ++AA I QK +K D R F DGIY+ +K+ Sbjct: 6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20 Identity = 58/178 (32.58%), Postives = 96/178 (53.93%), Query Frame = 2 Query: 71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 ++IPD V +++ + VEGP G ++R + ++D + D + + + KT + + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK R+ + V+ D +E+ L G IE V ++AA I Q V +KD R F DG+Y+ EK Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.287e-20 Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 2 Query: 56 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 ++ ++IP+ V +++ + VEGP G ++R + ++ + D + ++ D KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK R+ T IR D ++ E+V L G E V ++AA I Q V +KD R F DG+Y+++K Sbjct: 1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDET--DAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3) HSP 1 Score: 99.7525 bits (247), Expect = 2.287e-20 Identity = 62/178 (34.83%), Postives = 101/178 (56.74%), Query Frame = 2 Query: 71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 ++IP+ V + + I VEG G ++R + ++D + DG+T + I++ + KT + I T SH+ N+ GVT+G+ Y M Y+HFP+ ++ + IE NFLGEK R+ + G T + D +EL + G DIE V ++AA I Q + +KD+R F DG+Y++ K Sbjct: 6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.483e-19 Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 2 Query: 71 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 601 ++IPD V ++ + VEGP G ++R + ++ D E G ++ D + KT + + T SHV N+ GVT+G+ Y M Y+HFP+ S+ + I I NFLGEK RK + G T + D +EL + G IE V ++AA I Q V +KD R F DG+Y++E Sbjct: 5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19 Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 2 Query: 77 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 607 IP+ VKV +++V GP+G++ R F +H + K+ ++ +F +R+ I T SH+ N++ GV + Y+++ Y HFP+ + N +E NFLGEK ++++ LD V V I +K + E+V++ D E A++I Q K KD R+F DGI++ K+ Sbjct: 12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18 Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 2 Query: 53 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 + +++P+ V++ I ++ GP+G+ +R K+ + E G K+++ +K A + T H+ NLITGV +G+ Y ++ VYAHFPI + N IE NF+GEK R+ ++ V S + ++ + G DIE ++AA + Q +K KD R F DGIY+ +K Sbjct: 18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.769e-18 Identity = 61/179 (34.08%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 71 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 ++IP+G+ V + V GP G + R + + ++ DGE +++DA ++ A + T SH+ NL+ GV +G+ KM +YAHFP+ + + K + I NFLGEKK R +L G T ++ +E+ + G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.135e-18 Identity = 55/191 (28.80%), Postives = 107/191 (56.02%), Query Frame = 2 Query: 53 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 I+ E + I D V+++I+ + + V+GP+G+++++F + D +L + + ++ I A +R+ A + +++ N+ GVT+G+ YK++ VY+HFP + + I NF+GE R +++D VI + ++++ G D E V ++AA + Q ++K++D R F DGIY+ EK Sbjct: 17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.534e-16 Identity = 55/169 (32.54%), Postives = 95/169 (56.21%), Query Frame = 2 Query: 44 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 535 M+ + S E ++IP GV V I +++V+GP G+++++FK+ + L DG K+ ++ + ++ A + T + N+ GVT+G+RYK++ +Y HFP+ + N IE NFLG K +++ GV V K K+++V++G D ELVS AA + Sbjct: 1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQ-DG-----KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159 The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bpback to top |