FC877931

Overview
NameFC877931
Unique NameFC877931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig981 contig Ccv1_Contig981:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF3_ARATH (Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+    GHHLT+AAIVGHDGSVWAQS+NFPQFK +E + IMKDF+EPG LAPTGL + G KYMVIQGEPGAVIRGKK
Sbjct:   12 MCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEPGHLAPTGLFMAGAKYMVIQGEPGAVIRGKK 90          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_MAIZE (Profilin-2 OS=Zea mays GN=PRO2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHL +AAIVGHDG+ WAQS+ FP+FK E++A IMKDF+EPG LAPTGL LG TKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLAAAAIVGHDGAAWAQSTAFPEFKTEDMANIMKDFDEPGHLAPTGLFLGPTKYMVIQGEPGAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF_CROSA (Profilin OS=Crocus sativus PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.432e-29
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+DGH LTSAAI+GHDGSVWAQS+ FP+ KP EI AI+ DF EPGSLAPTG+++ G KYMVIQGEPG VIRGKK
Sbjct:   12 MCDMDGHVLTSAAILGHDGSVWAQSAGFPELKPAEITAILNDFNEPGSLAPTGMYINGAKYMVIQGEPGVVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_SOLLC (Profilin-2 OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.432e-29
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +C+ +G+HLTSAAI+G DG+VWAQS+NFPQFKPEEI  IM DF  PG+LAPTGL+LGGTKYMVIQGEP AVIRGKK
Sbjct:   12 LCENEGNHLTSAAIIGQDGTVWAQSANFPQFKPEEITGIMNDFAVPGTLAPTGLYLGGTKYMVIQGEPEAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF1_SOLLC (Profilin-1 OS=Solanum lycopersicum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.432e-29
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 2
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G  HHL+SAAI+G DGSVWAQS NFP+FK EEI  IMKDF+EPG LAPTGL L GTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCDIEGTGHHLSSAAILGFDGSVWAQSPNFPKFKAEEITNIMKDFDEPGHLAPTGLFLAGTKYMVIQGEPGAVIRGKK 89          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF_MERAN (Profilin OS=Mercurialis annua PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 2
Query:    2 MCDIDGH--HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDG   HL +A+IVGHDGS+WAQS++FPQ KPEEI  IMKDF+EPG LAPTGL++ GTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGQGQHLAAASIVGHDGSIWAQSASFPQLKPEEITGIMKDFDEPGHLAPTGLYIAGTKYMVIQGESGAVIRGKK 89          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF_APIGR (Profilin OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:    2 MCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+++G+    LT+AAI+GHDGSVWAQSS FPQ KPEEIA IMKDF+EPG LAPTGL+LGG KYMVIQGEP AVIRGKK
Sbjct:   12 MCEVEGNPGQTLTAAAIIGHDGSVWAQSSTFPQIKPEEIAGIMKDFDEPGHLAPTGLYLGGAKYMVIQGEPNAVIRGKK 90          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_LILLO (Profilin-2 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+IDG HLT+AAI+GHDGS+WAQS +FPQ K E+I  +M DF EPGSLAPTGL LG  KYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIDGQHLTAAAIIGHDGSIWAQSESFPQVKSEQITGVMNDFAEPGSLAPTGLFLGDNKYMVIQGEPGAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF_BRANA (Profilin OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 61/79 (77.22%), Postives = 66/79 (83.54%), Query Frame = 2
Query:    2 MCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+    GHHL +AAI GHDGSVWAQS+NFPQFK +E A IMKDF+EPG LAPTGL L G KYMVIQGEPGAVIRGKK
Sbjct:   12 MCDVGDGQGHHLAAAAIFGHDGSVWAQSANFPQFKGQEFANIMKDFDEPGHLAPTGLFLAGAKYMVIQGEPGAVIRGKK 90          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF_DAUCA (Profilin OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 2
Query:    2 MCDIDGH---HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC++DG+    L++AAI+GHDGSVWAQSS FP+FKPEEI  IMK+F+EPG LAPTGL+LGGTKYMVIQGEP AVIRGKK
Sbjct:   12 MCEVDGNPGQQLSAAAIIGHDGSVWAQSSTFPKFKPEEITGIMKNFDEPGHLAPTGLYLGGTKYMVIQGEPIAVIRGKK 90          
The following BLAST results are available for this feature:
BLAST of FC877931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF3_ARATH1.862e-2977.22Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV... [more]
PROF2_MAIZE1.862e-2977.63Profilin-2 OS=Zea mays GN=PRO2 PE=2 SV=2[more]
PROF_CROSA2.432e-2976.32Profilin OS=Crocus sativus PE=1 SV=1[more]
PROF2_SOLLC2.432e-2977.63Profilin-2 OS=Solanum lycopersicum PE=1 SV=1[more]
PROF1_SOLLC2.432e-2980.77Profilin-1 OS=Solanum lycopersicum GN=PRO1 PE=2 SV... [more]
PROF_MERAN4.149e-2976.92Profilin OS=Mercurialis annua PE=1 SV=1[more]
PROF_APIGR4.149e-2977.22Profilin OS=Apium graveolens PE=1 SV=1[more]
PROF2_LILLO4.149e-2976.32Profilin-2 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_BRANA7.077e-2977.22Profilin OS=Brassica napus PE=2 SV=1[more]
PROF_DAUCA1.207e-2875.95Profilin OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO13RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877931 ID=FC877931; Name=FC877931; organism=Citrus clementina; type=EST; length=717bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATGATAAGACTTTCCTAATGAGGTTTGGTGT
GAGCATCATTATCATGATCAATGTCCCCCAAAGTTGTTTGAACTTTTGAA
TGTAAAGTTGTTATCCAAGGAATCTCTATCTTTCGTGCTGTCAAGGACTT
CAACTGCTCATCTGTAAGACTGTATATTTATGGATACAGACTTTTGAATG
AGGCATCTTCTCAAAAGAAGAATAATACAGCTTCATGGGTCTGATTGATG
GGTCCACCTCAAGGACTGCTTAATTGAGTTAGGTCTGATTTTGCACATTC
TTTATTGGTGATAGTTACTTATCGCTGTGGAACACAAGCAAATGGATGCC
AGATTGCTTCTCCTTTTACCTTTTATAATCTTTTTTGTAATATGAAAAAT
CATATCTGTTGGTGGGT
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