FC877931

Overview
NameFC877931
Unique NameFC877931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig981 contig Ccv1_Contig981:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDG+ LT+AAI+G DGSVW+QS+ FP F+ EEIAAI+KDF++PG+LAPTGL LGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGNRLTAAAILGQDGSVWSQSATFPAFRLEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF1_ARATH (Profilin-1 OS=Arabidopsis thaliana GN=PRO1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG LAPTGL LGG KYMVIQGE GAVIRGKK
Sbjct:   12 MCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_TOBAC (Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDIDG---HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            M DI+G   +HL +AAI+G+DGSVWAQS+ FP+FKPEEI  IMKDF+EPG LAPTGL LGG KYMVIQGEPGAVIRGKK
Sbjct:   12 MADIEGQQGNHLAAAAILGNDGSVWAQSTTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKK 90          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF3_AMBAR (Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.277e-27
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 2
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G  HHLTSAAI+GHDG+VWAQSSNFPQFKPEE+  I+ +F++ G+LAPTG+ + G KYMV+QGE GAVIRGKK
Sbjct:   12 MCDIEGTGHHLTSAAILGHDGTVWAQSSNFPQFKPEEMKGIITEFDQAGTLAPTGMFIAGAKYMVLQGEQGAVIRGKK 89          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_ARATH (Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+++G+HLT AAI G DGSVWAQSS FPQ KP EIA I KDFEE G LAPTGL LGG KYMV+QGE GAVIRGKK
Sbjct:   12 MCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHLAPTGLFLGGEKYMVVQGEAGAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF1_PARJU (Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 2
Query:    2 MCDI-DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+ DG+   SAAI+GHDGSVWAQS+NFPQ KPEE+  IM DF E G LAPTGL LGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDVGDGNTPASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEAGFLAPTGLFLGGTKYMVIQGESGAVIRGKK 88          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF3_TOBAC (Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            G HL +AAI+GHDGSVWAQS +FP+FKPEEI  IMKDF+EPG LAPTGL L G KYMVIQGEPGAVIRGKK
Sbjct:   19 GQHLAAAAILGHDGSVWAQSPHFPKFKPEEITNIMKDFDEPGFLAPTGLFLAGIKYMVIQGEPGAVIRGKK 89          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF5_ARATH (Profilin-5 OS=Arabidopsis thaliana GN=PRO5 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+ G+ LT+AAI+G DGSVWAQS+NFPQ KPEEI  I  DF  PG+LAPTGL LGG KYMVIQGEP AVIRGKK
Sbjct:   12 MCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTLAPTGLFLGGNKYMVIQGEPNAVIRGKK 87          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G   HLTSAAI+G DG+VWAQS+ FPQFKPEE+  I+K+F+E G+LAPTG+ + G KYMV+QGEPGAVIRGKK
Sbjct:   12 MCDIEGTGQHLTSAAILGLDGTVWAQSAKFPQFKPEEMKGIIKEFDEAGTLAPTGMFIAGAKYMVLQGEPGAVIRGKK 89          
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_PARJU (Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 2
Query:    2 MCDI-DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+ DG+ L SAAI+GHDGSVWAQS+NFPQ KPEE+  IM DF E G LAPTGL LGGTKYMVIQGE GAVI GKK
Sbjct:   12 MCDVGDGNTLASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEGGFLAPTGLFLGGTKYMVIQGESGAVI-GKK 87          
The following BLAST results are available for this feature:
BLAST of FC877931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF1_CITSI1.207e-2877.63Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROF1_ARATH1.207e-2877.63Profilin-1 OS=Arabidopsis thaliana GN=PRO1 PE=1 SV... [more]
PROF2_TOBAC1.022e-2775.95Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1[more]
PROF3_AMBAR2.277e-2771.79Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 ... [more]
PROF2_ARATH3.883e-2776.32Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV... [more]
PROF1_PARJU3.883e-2776.62Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1[more]
PROF3_TOBAC5.072e-2780.28Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1[more]
PROF5_ARATH6.624e-2775.00Profilin-5 OS=Arabidopsis thaliana GN=PRO5 PE=2 SV... [more]
PROF_HELAN4.294e-2670.51Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF2_PARJU7.324e-2676.62Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO13RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877931 ID=FC877931; Name=FC877931; organism=Citrus clementina; type=EST; length=717bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATGATAAGACTTTCCTAATGAGGTTTGGTGT
GAGCATCATTATCATGATCAATGTCCCCCAAAGTTGTTTGAACTTTTGAA
TGTAAAGTTGTTATCCAAGGAATCTCTATCTTTCGTGCTGTCAAGGACTT
CAACTGCTCATCTGTAAGACTGTATATTTATGGATACAGACTTTTGAATG
AGGCATCTTCTCAAAAGAAGAATAATACAGCTTCATGGGTCTGATTGATG
GGTCCACCTCAAGGACTGCTTAATTGAGTTAGGTCTGATTTTGCACATTC
TTTATTGGTGATAGTTACTTATCGCTGTGGAACACAAGCAAATGGATGCC
AGATTGCTTCTCCTTTTACCTTTTATAATCTTTTTTGTAATATGAAAAAT
CATATCTGTTGGTGGGT
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