FC877931

Overview
NameFC877931
Unique NameFC877931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig981 contig Ccv1_Contig981:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 2 
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G   HLTSAAI G DG+VWA+S++FP+FKP EI AI+K+F E G LAPTGL LGG KYMVIQGE GAVIRGKK
Sbjct:   12 MCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKK 89
[Close]
BLAST of FC877931 vs. ExPASy Swiss-Prot
Match: PROF2_ARTVU (Profilin-2 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 2 
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G   HLT+AAI+G DG+VWA+S  FP+FKPEE+  I+ +F E G+LAPTGL LGG KYMV+QGE GAVIRGKK
Sbjct:   12 MCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKK 89
The following BLAST results are available for this feature:
BLAST of FC877931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF1_ARTVU1.632e-2573.08Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF2_ARTVU4.019e-2467.95Profilin-2 OS=Artemisia vulgaris PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO13RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877931 ID=FC877931; Name=FC877931; organism=Citrus clementina; type=EST; length=717bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATGATAAGACTTTCCTAATGAGGTTTGGTGT
GAGCATCATTATCATGATCAATGTCCCCCAAAGTTGTTTGAACTTTTGAA
TGTAAAGTTGTTATCCAAGGAATCTCTATCTTTCGTGCTGTCAAGGACTT
CAACTGCTCATCTGTAAGACTGTATATTTATGGATACAGACTTTTGAATG
AGGCATCTTCTCAAAAGAAGAATAATACAGCTTCATGGGTCTGATTGATG
GGTCCACCTCAAGGACTGCTTAATTGAGTTAGGTCTGATTTTGCACATTC
TTTATTGGTGATAGTTACTTATCGCTGTGGAACACAAGCAAATGGATGCC
AGATTGCTTCTCCTTTTACCTTTTATAATCTTTTTTGTAATATGAAAAAT
CATATCTGTTGGTGGGT
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