FC877936

Overview
NameFC877936
Unique NameFC877936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length914
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_THEPD (Prolyl-tRNA synthetase OS=Thermofilum pendens (strain Hrk 5) GN=proS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.579e-33
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET   +M++ WI S+RDLPL + Q  +V R E  T+P +R  EFLW E H A AT EEA  +  + ++   K  +E   IP +  R+   + F+GA  TY  + +M D
Sbjct:  109 LRPTSETAFYYMYSYWIQSWRDLPLKLYQSVSVYRNEKNTRPLIRGREFLWIEAHDAFATHEEALNQIREDMENSRKVIWEKLGIPFLFLRRPPWDKFSGAEDTYAADTIMPD 221          

HSP 2 Score: 75.0998 bits (183), Expect = 4.579e-33
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  245 NRERVITPRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            + + +   +S+DF+ WY  V+S A L D    V+G +V +P+   I +AI  +   + ++TGH  + FP  IP    EKE  HVEGF PE+  VT  G ++LE +L
Sbjct:    2 SEQGITVSKSEDFSEWYSQVLSKAGLVDLRYNVQGFVVHKPWLMRIIKAIYRFFEEELEKTGHEPVLFPLVIPEENFEKEKEHVEGFKPEVFWVTQAGDEKLERRL 107          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_MYCGA (Prolyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=proS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.419e-31
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE    +++ + + +YR LP+  NQW +V R E  T+PF+R  EF W E H+   T E++   A+ +  +Y +F  +   IP++AG K++ E FAGA  TYT+E +M D
Sbjct:  107 LRPTSEIAFCNLWRETLRNYRQLPIKHNQWTSVFRVEKNTRPFLRNSEFFWHEIHSCFETEEQSNDFAVDIWKLYQRFIKDILCIPLVAGEKTEAEKFAGAKTTYTVETIMPD 219          

HSP 2 Score: 60.077 bits (144), Expect = 1.419e-31
Identity = 28/93 (30.11%), Postives = 48/93 (51.61%), Query Frame = 2
Query:  248 RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVT 526
            ++ + + +  + + WY +VIS   L  Y  ++G M   P G+ IW+ I+  L  +F +     +  P  I  +    E  H+EGF+PEL +VT
Sbjct:    4 KKNLASSKDDNISDWYTEVISKGNLIHYSNIKGFMSFLPNGWKIWQLIKKELTKEFDQRDILELCLPSLISQNDFLLEKKHLEGFAPELFIVT 96          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_MYCMO (Prolyl-tRNA synthetase OS=Mycoplasma mobile GN=proS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 75/143 (52.45%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  495 RDSVQNWLL*LLEVERN*KK----NLWL*QVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +D VQ +   L+ VE+   K     L+L   RPTSE +    F   ++SY DLPLL+NQWANV RWE  T PF+R  EFLWQEGHT+H + EEA + + +MI IY  F  E  AIPVI G+K++ E FAGA  TYTIEAMM D
Sbjct:   83 KDHVQGFAPELITVEKVGDKVLNEKLFL---RPTSEVLFAEYFKTQLNSYNDLPLLLNQWANVFRWEKTTSPFLRNSEFLWQEGHTSHYSEEEAHQFSKKMIQIYANFFEEFLAIPVIIGQKTESEKFAGAHTTYTIEAMMKD 222          

HSP 2 Score: 97.0561 bits (240), Expect = 1.540e-19
Identity = 48/100 (48.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  260 ITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            ITP  QDF  WY DVI+   LA YG ++G +V  P  Y IWE +Q   N   KE    N+Y P  IP S I  E  HV+GF+PEL  V   G K L EKL
Sbjct:    9 ITPLEQDFAKWYTDVITKGNLATYGVLKGNIVFMPNSYGIWENVQSNFNKIIKELNVKNLYLPTLIPESLINSEKDHVQGFAPELITVEKVGDKVLNEKL 108          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METS5 (Prolyl-tRNA synthetase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=proS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.313e-31
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEK 556
            S +F+ W+  VIS AE+ DYG  PV+G+ V  PYG+ I + +   +     ETGH  + FP  IP + ++KEA H++GF  E+  VT GG  ELEE+
Sbjct:    9 SSNFSEWFDWVISQAEIYDYGRYPVKGSGVWMPYGFKIRQNVTTLIRKLLDETGHEEVLFPLLIPETLLKKEAEHIKGFEKEVFWVTHGGEDELEER 105          

HSP 2 Score: 73.1738 bits (178), Expect = 5.313e-31
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE  +  M + WI  Y  LP    Q  +V R+E + T+P +R  E   ++E HT H T E+A ++  + ++IY+KF ++   IP +  R+ + + FAGA  T  ++ +M D
Sbjct:  108 LRPTSEVAITLMESLWIKGYSQLPRKFYQIVSVFRYETKATRPMIRVRELSTFKEAHTVHETFEDAARQVDEAVEIYSKF-FDILGIPYLISRRPEWDKFAGAEYTIALDTIMPD 221          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_NANEQ (Prolyl-tRNA synthetase OS=Nanoarchaeum equitans GN=proS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.585e-30
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET + +MF +WI SYRDLPL++     V R+E + TK  +R  E LW E H+ H + E+A +   +  ++Y    ++   +P I  R+ + + F G   TY  +A+M D
Sbjct:  103 LRPTSETEMYYMFAKWIESYRDLPLIIYMTNTVYRYETKSTKALIRGREVLWNETHSVHRSEEDAREHMAKAKEVYDYIFWDVLYLPYIWVRRPEWDKFPGGEETYAADAIMPD 216          

HSP 2 Score: 69.3218 bits (168), Expect = 2.585e-30
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            +S++   WY +++  A + D   PV+G  V +PYGY  ++ +   L  K +  G    +FP  IPYS  +KE+ H++GF  E+  +   G  +LE+ L+
Sbjct:    4 KSENPKEWYNEIVRKANIIDDAYPVKGMPVYKPYGYKAFKFLMSLLENKLESIGAEPAWFPIVIPYSIFKKESEHIKGFEEEVFWIERAGNDKLEDPLI 102          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_CALMQ (Prolyl-tRNA synthetase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=proS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.717e-30
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  266 PRSQ--DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            PRS+   F  W+  VI +AE+ DY  PV+G  + RPYG AI   ++  +     ETGH  + FP FIPY F  KE+ H+ GF  E+  V+ G G   EE+LV
Sbjct:    9 PRSRWVSFIEWFNKVIMDAEVYDYRYPVKGAYIWRPYGVAIRRNVEALIRRLHDETGHQEVLFPVFIPYEFFSKESEHIRGFESEVFWVSKGTGG--EERLV 108          

HSP 2 Score: 75.0998 bits (183), Expect = 5.717e-30
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  MF  WI  + DLPL V Q  +V R E + T P +R  E  +++E HTAHA  ++AE++  + + IY +   +   IP +  R+   + FAGA  T   + +M D
Sbjct:  109 LRPTSETAMMPMFKLWIRDHTDLPLRVYQIVSVFRAETKMTHPMIRLREISMFKEAHTAHADRDDAERQVKEAVGIYRRI-MDELCIPYLISRRPDWDKFAGAVYTIAFDTIMPD 222          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_AERPE (Prolyl-tRNA synthetase OS=Aeropyrum pernix GN=proS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.691e-30
Identity = 41/115 (35.65%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET + +M T WI SYR LP    Q  ++ R+E + T+P +R  E   ++E HT H + E+AE++ ++ I++Y K  ++   IP +  ++ + + FAGA  T   + +M D
Sbjct:  110 LRPTSETSITYMETFWIKSYRQLPKKYYQVVSIFRYETKATRPMIRLREVTTFKEAHTVHESFEDAERQVLEAIEVY-KAIFDRLLIPYVISKRPEWDKFAGALYTIAFDTIMPD 223          

HSP 2 Score: 74.3294 bits (181), Expect = 9.691e-30
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            S DF  W+  VI  AE+ DYG  PV+G  V  PYG+ I   + + +      TGH  + FP  IP   + +E+ H+ GF  E+  VT GG +EL+ KL
Sbjct:   11 SSDFPRWFDWVIETAEVYDYGRYPVKGMGVWMPYGFQIRRRVLEVVRGLLDSTGHEEVLFPLLIPEHLLRRESEHIRGFEGEVYWVTHGGREELDVKL 108          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METJA (Prolyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=proS PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.644e-29
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET + +M   W+  + DLP+ + Q  N  R+E + T+P +R  E + ++E HTAH+T EEAE +  + I IY KF ++   IP +  ++ + + F GA  T   + +  D
Sbjct:   98 LRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKF-FDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPD 211          

HSP 2 Score: 71.633 bits (174), Expect = 1.644e-29
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 2
Query:  278 DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            +F+ WY D++  AE+ D   P++G  V  PYG+ I     + +     E+GH    FP  IP   + KEA H++GF  E+  VT GG  +L+ KL
Sbjct:    2 EFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKL 96          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_SULAC (Prolyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=proS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.139e-29
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET + +M T W+ SY+ LP    Q  +V R+E + T+P +R  E   ++E HT H T E+AE++  + I+IY  F +E   IP I  ++ + + FAGA  T   + +M D
Sbjct:  108 LRPTSETAITYMETYWVQSYKQLPKKYYQIVSVFRYETKATRPMIRLREVSTFKEAHTLHETYEDAERQVKEAIEIYKNF-FEELGIPYIMSQRPEWDKFAGAIYTIAFDTIMPD 221          

HSP 2 Score: 69.3218 bits (168), Expect = 2.139e-29
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  278 DFNAWYLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            +F+ W+  VI  AE+ DYG  PV+G  V  PYG+ I +A  D +       GH  + FP  +P   + +E  H++GF  E+  VT GG + L+ +L
Sbjct:   11 NFSEWFDWVIREAEIYDYGRYPVKGMGVWLPYGFKIRQAAVDLIRKLLDAKGHEEVLFPLLVPEDLLRREGEHIKGFESEVFWVTKGGEENLDIRL 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_MYCGE (Prolyl-tRNA synthetase OS=Mycoplasma genitalium GN=proS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.785e-29
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE    +++ +   SY DLPL+ NQW  V R E  T+PF+R  EF WQE H       ++E+ A+   ++Y         IP   G KS+ E FAGA  T+TIEA+M D
Sbjct:  121 LRPTSEIAFCNLWKKQELSYHDLPLIYNQWTQVFRAEKNTRPFLRNSEFYWQETHGLFVDQSQSEQAAISFWNLYQDLIINKLCIPAFVGLKSESEKFAGAKNTWTIEAIMPD 233          

HSP 2 Score: 56.9954 bits (136), Expect = 2.785e-29
Identity = 35/120 (29.17%), Postives = 57/120 (47.50%), Query Frame = 2
Query:  260 ITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLN--------------VKFKETGH-----SNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            +T ++QD  +WY  ++  A+L  +G V+GT+      + +W  IQ   N               KF+ T         +  P    YS  +KE +H++GF+PEL L+   G K+L + LV
Sbjct:    1 MTKKTQDLTSWYDQLLVKAKLICHGEVKGTVCFLNNSWGLWMEIQQLYNDAIANKNQLSAIALTKFQPTTSFCYQVFQVQLPTLSFYSEYQKEKTHIKGFNPELFLINQVGQKQLNDPLV 120          
The following BLAST results are available for this feature:
BLAST of FC877936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_THEPD4.579e-3340.71Prolyl-tRNA synthetase OS=Thermofilum pendens (str... [more]
SYP_MYCGA1.419e-3139.82Prolyl-tRNA synthetase OS=Mycoplasma gallisepticum... [more]
SYP_MYCMO1.754e-3152.45Prolyl-tRNA synthetase OS=Mycoplasma mobile GN=pro... [more]
SYP_METS55.313e-3143.30Prolyl-tRNA synthetase OS=Metallosphaera sedula (s... [more]
SYP_NANEQ2.585e-3036.84Prolyl-tRNA synthetase OS=Nanoarchaeum equitans GN... [more]
SYP_CALMQ5.717e-3043.14Prolyl-tRNA synthetase OS=Caldivirga maquilingensi... [more]
SYP_AERPE9.691e-3035.65Prolyl-tRNA synthetase OS=Aeropyrum pernix GN=proS... [more]
SYP_METJA1.644e-2935.65Prolyl-tRNA synthetase OS=Methanocaldococcus janna... [more]
SYP_SULAC2.139e-2938.26Prolyl-tRNA synthetase OS=Sulfolobus acidocaldariu... [more]
SYP_MYCGE2.785e-2941.59Prolyl-tRNA synthetase OS=Mycoplasma genitalium GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877936 ID=FC877936; Name=FC877936; organism=Citrus clementina; type=EST; length=914bp
CTCGAAACGACAATAGGAAATGGTATCGGCTTTAAGACTCCCCTCCTTAC
ATCTCACTAATCTCTTCTCCTCCTCTCCCTGTATCTCCCGCCGGTCTTCG
GCGATTCTACGGCGTCACCATCGCCTTCGGCCTCCGCCGACTCTGACTGC
TGGATTCTCCGCTCAGAGCGCGGCGTCTAGTCCGCCGGAAACCGATGACA
AAGTCGTGGAAATCGAGAAGAACCGAGCGAGTCAAGACCGAGGCAACCGG
GAACGAGTCATCACGCCAAGGTCGCAGGACTTCAATGCTTGGTACCTCGA
TGTTATTTCCAACGCGGAGCTTGCTGATTACGGTCCGGTCCGTGGGACCA
TGGTTATTAGGCCTTACGGATACGCTATTTGGGAGGCAATTCAGGATTAT
TTGAATGTAAAGTTCAAGGAGACAGGGCACAGTAACATGTACTTCCCACA
GTTTATACCATACTCCTTCATCGAGAAAGAAGCCAGCCATGTTGAGGGAT
TCAGTCCAGAATTGGCTCTTGTAACTATTGGAGGTGGAAAGGAACTAGAA
GAAAAACTTGTGGCTGTAACAGGTTCGACCTACAAGTGAAACAATTGTAA
ATCACATGTTTACTCAGTGGATTCATAGTTATCGCGATCTTCCTCTCCTG
GTTAACCAGTGGGCAAATGTCACACGATGGGAGATGCGCACAAAACCATT
TGTGAGAACCCTTGAATTTCTATGGCAGGAGGGCCATACTGCTCATGCCA
CTCCAGAAGAGGCAGAGAAAGAGGCAATGCAGATGATTGATATTTACACA
AAGTTTGCTTATGAGCATACTGCAATACCCGTTATTGCTGGTCGAAAATC
GAAAGTGGAAACTTTTGCTGGTGCTTCAAGGACCTACACCATAGAGGCTA
TGATGGGTGATAAG
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