FC877936

Overview
NameFC877936
Unique NameFC877936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length914
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METBU (Prolyl-tRNA synthetase OS=Methanococcoides burtonii (strain DSM 6242) GN=proS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.564e-26
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M+  W+ S+ DLPL + Q  N  R+E + T+P +R  E   ++E HT HAT +EA  +  + I +Y +F Y+  AIPV+  ++   + F GA  T  ++++M D
Sbjct:  110 LRPTSETAIYPMYRLWVRSHADLPLKLYQIVNTFRYETKHTRPLIRLREITSFKEAHTVHATWDEAASQVEEAIRLYIEF-YKRLAIPVLPSKRPSWDKFPGADYTIAVDSLMPD 223          

HSP 2 Score: 59.3066 bits (142), Expect = 1.564e-26
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 2
Query:  266 PRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            P  ++F+ WY  ++  AE+ D   PV+G+ V  P+G++I   + D +     +  H    FP  IP +   KEA H++GF  E+  V  GG   L+ KL
Sbjct:   11 PSKENFSEWYNGMLQIAEIMDVRYPVKGSYVWYPFGFSIRRNVYDIIR-GLLDKDHQETLFPLLIPENEFMKEAEHIKGFEEEVYWVLNGGTTPLDVKL 108          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PYRHO (Prolyl-tRNA synthetase OS=Pyrococcus horikoshii GN=proS PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.448e-26
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            S++F+ W+ +VI  A + D   PV+G  V  PYG  I   I+ +++ + + TGH  + FP  IP +  +KEA H+ GF  E+  VT  G + L+ +LV
Sbjct:    8 SEEFSEWFNEVIEEAGILDKRYPVKGMNVWLPYGLKIMRNIEKFIHEEMERTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWVTHAGHEPLDVRLV 105          

HSP 2 Score: 69.3218 bits (168), Expect = 3.448e-26
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  MF  WI S+ DLP  V Q  NV R+E + T+P +R  E   + E HTAHA  E+AE++  + ++I+        A+  I  ++ + + F GA  +   E +M D
Sbjct:  106 LRPTSETAMYSMFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRFFEAHTAHADFEDAERQIKEDLEIFDNL-MRKLALAYIISKRPEWDKFPGAFYSLGAEVVMPD 219          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METTP (Prolyl-tRNA synthetase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=proS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.603e-26
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M   WI S+ DLPL + Q  N  R+E + T+P +R  E   ++E HTAHAT EEA  +    I  Y +F Y   AIP +  ++   + F GA  +  ++ +M D
Sbjct:  111 LRPTSETAIYPMLKLWIRSHADLPLRIYQIVNTFRYETKHTRPLIRLREITSFKEAHTAHATWEEAAMQVEIAIQRYIEF-YRRLAIPCLVSKRPSWDKFPGADYSIALDVIMPD 224          

HSP 2 Score: 62.3882 bits (150), Expect = 7.603e-26
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  248 RERVITPRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYA----IWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            R+  + P+S +F+ WY +++ +AE+ D   PV+G  V  P+G+A    +++ I++ L+V   ET      FP  IP +   KEA H++GF  E+  VT GG   L+ KL
Sbjct:    7 RDAKLPPKS-NFSEWYHELLRSAEIVDVRYPVKGMSVWYPFGFALRSHVYQIIKELLDVDHYET-----QFPLLIPETEFMKEAEHIKGFEDEVYWVTHGGRDPLDIKL 109          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PYRFU (Prolyl-tRNA synthetase OS=Pyrococcus furiosus GN=proS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.896e-26
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  MF  WI S+ DLP  V Q  NV R+E + T+P +R  E   + E HTAHA  E+AE++  + ++I+     +  AI  +  ++ + + F GA  +   E +M D
Sbjct:  106 LRPTSETAMYSMFALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRFFEAHTAHADFEDAERQIKEDLEIFDNL-MKKLAIAYVISKRPEWDKFPGAYYSLGAEVVMPD 219          

HSP 2 Score: 68.5514 bits (166), Expect = 9.896e-26
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            S++F+ W+ +VI  A + D   PV+G  V  PYG  I + I+ +++ + + T H  + FP  IP +  +KEA H+ GF  E+  VT  G + L+ +LV
Sbjct:    8 SENFSEWFNEVIEEAGILDKRYPVKGMNVWLPYGLKIMKNIEKFIHEEMERTDHQEVLFPALIPETEFQKEAEHIAGFEGEVFWVTHAGHEPLDVRLV 105          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METLZ (Prolyl-tRNA synthetase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=proS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.288e-25
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M+  W+ S+ DLPL + Q  N  R+E + T+P +R  E   + E HT H   ++A K+    + + T+F Y    +P+I  R+   + F GA  T  I+A+M D
Sbjct:  108 LRPTSETAIYPMYALWVRSHADLPLKLYQVVNTFRYETKHTRPLIRLREITSFMESHTVHTDWDDANKQVEYELGLATEF-YRDLGVPIIISRRPDWDKFPGADFTMAIDAVMPD 221          

HSP 2 Score: 62.7734 bits (151), Expect = 1.288e-25
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  266 PRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAI----WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            P   DF+AWY +VI  A++ D   PV+G  V  P+G+A+    +  ++  LN   +ET      FP  IP +   KEA H++GF  E+  VT GG   L+ KL
Sbjct:    9 PSRTDFSAWYNEVIRRADIMDVRYPVKGLYVWYPFGFALRNHTYTLLRSLLNRDHEET-----LFPLLIPETEFMKEAEHIKGFEDEVYWVTHGGLSPLDVKL 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_THENV (Prolyl-tRNA synthetase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=proS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.676e-25
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M   WI  Y+DLPL + Q  +V R E + T P +R  E  +++E HT H   E+AE++  + ++IY K  ++   +  +  ++   + FAGA  T   + ++ D
Sbjct:  111 LRPTSETAIMPMVKLWIQDYKDLPLRLYQIVSVFRAETKMTHPMIRLREISMFKEAHTVHVDREDAERQVREAVEIY-KRIFDEMCLAYMINKRPDWDKFAGAEYTIAFDTVLPD 224          

HSP 2 Score: 67.781 bits (164), Expect = 1.676e-25
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  290 WYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            W+  ++  AEL D   PV+G  V RPYG  +   +++ +     ETGH  + FP FIPY F  KE+ H+ GF  E+  V+ GG  E  E+LV
Sbjct:   21 WFHWLLREAELYDVRYPVKGAYVWRPYGMKLRRNVEELIRRVHDETGHEEVLFPVFIPYEFFGKESQHIRGFEKEVFWVSKGG--EGGERLV 110          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METTH (Prolyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=proS PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.839e-25
Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET++  MF  W+ S+ DLP+   Q  N  R+E + T+P +R  E   ++E HT HAT  EAE++  + ++IY +F +    IP +  R+   + F G+  T   + +M D
Sbjct:  114 LRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEF-FNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD 227          

HSP 2 Score: 58.151 bits (139), Expect = 2.839e-25
Identity = 32/95 (33.68%), Postives = 52/95 (54.74%), Query Frame = 2
Query:  278 DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            +F+ W+ +++  AE+ D   PV+G  V  P+G+ I +     L  +  +  H  + FP  +P   + KEA HV+GF  E+  VT GG  +L+ KL
Sbjct:   19 EFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILR-RILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKL 112          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PYRCJ (Prolyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=proS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.808e-25
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M   W+  Y+DLPL + Q  +V R E + T P +R  E  +++E HT H   E+AE++  + ++IY K  ++   +  +  R+   + FAGA  T   + ++ D
Sbjct:  112 LRPTSETAIMPMVKLWVQDYKDLPLRLYQIVSVFRAETKMTHPMIRLREISMFKEAHTVHVDREDAERQVREAVEIY-KRIFDEMCLAYMINRRPDWDKFAGAVYTIAFDTVLPD 225          

HSP 2 Score: 66.2402 bits (160), Expect = 4.808e-25
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  290 WYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            W+  ++  AE+ D   PV+G  V RPYG  I   ++  +     ETGH  + FP FIPY F  KE+ H+ GF  E+  V+ GG  E  E+LV
Sbjct:   22 WFHWLLREAEIYDVRYPVKGAYVWRPYGMKIRRNVEALIRRLHDETGHEEVLFPVFIPYEFFGKESEHIRGFEKEVFWVSKGG--EGGERLV 111          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METS3 (Prolyl-tRNA synthetase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=proS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.262e-25
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M++ WI S+ DLPL   Q  N  R+E + T+P +R  E   ++E HTAHA+ EEA+ +  + I+ Y K  ++   IP    ++ + + F GA  T   +A+M D
Sbjct:   99 LRPTSETSIYPMYSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIRVREITTFKEAHTAHASKEEADIQVQEHIENY-KEIFDTLGIPYTLTKRPEWDKFPGADYTMAFDAIMPD 212          

HSP 2 Score: 61.2326 bits (147), Expect = 6.262e-25
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  275 QDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            ++F+ W+ D++  A + D   P++G  V  PYG+ I +   + +   + +  H  + FP  +P + + KE  HV+GF  E+  VT GG  +L EKL
Sbjct:    3 ENFSEWFHDILEEANITDSRYPIKGMAVWMPYGFQIRKYTTNLIKEVY-DRDHEEVLFPLLVPEAELAKEGLHVKGFEDEVYWVTHGGKTQLNEKL 97          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_THEVO (Prolyl-tRNA synthetase OS=Thermoplasma volcanium GN=proS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.797e-24
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMM 905
            +RPTSE+ +  MF+ W+ S+ DLPL + Q  +V R+E + T+ F+R  E  + E HTAH + E+AEK+  +   I+T+ A +   +P +  ++ + + F GA  T   + +M
Sbjct:  103 LRPTSESAMYPMFSLWVRSHADLPLKIYQIVSVYRYETKHTRSFIRIREIHFFEAHTAHESYEDAEKQMDEYRIIWTEIA-DALCLPFLYDQRPEWDKFPGAMYTIAFDTVM 213          

HSP 2 Score: 63.5438 bits (153), Expect = 1.797e-24
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            + ++F+ WY ++++ ++L+D   P++G  V RPYG+ I + I + +     +     + FP  I    +E E  H+ GF  E+  VT GG ++LEE+L
Sbjct:    4 KKENFSEWYNEIVTISDLSDKRYPIKGMNVWRPYGWKIMKLIDNIIRNAVDKHSFDEVNFPVLISRGMLEVEFEHIRGFENEIYWVTKGGKEKLEEEL 101          
The following BLAST results are available for this feature:
BLAST of FC877936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_METBU1.564e-2637.39Prolyl-tRNA synthetase OS=Methanococcoides burtoni... [more]
SYP_PYRHO3.448e-2636.73Prolyl-tRNA synthetase OS=Pyrococcus horikoshii GN... [more]
SYP_METTP7.603e-2638.26Prolyl-tRNA synthetase OS=Methanosaeta thermophila... [more]
SYP_PYRFU9.896e-2636.52Prolyl-tRNA synthetase OS=Pyrococcus furiosus GN=p... [more]
SYP_METLZ1.288e-2535.65Prolyl-tRNA synthetase OS=Methanocorpusculum labre... [more]
SYP_THENV1.676e-2533.04Prolyl-tRNA synthetase OS=Thermoproteus neutrophil... [more]
SYP_METTH2.839e-2535.65Prolyl-tRNA synthetase OS=Methanobacterium thermoa... [more]
SYP_PYRCJ4.808e-2533.04Prolyl-tRNA synthetase OS=Pyrobaculum calidifontis... [more]
SYP_METS36.262e-2537.39Prolyl-tRNA synthetase OS=Methanobrevibacter smith... [more]
SYP_THEVO1.797e-2434.82Prolyl-tRNA synthetase OS=Thermoplasma volcanium G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877936 ID=FC877936; Name=FC877936; organism=Citrus clementina; type=EST; length=914bp
CTCGAAACGACAATAGGAAATGGTATCGGCTTTAAGACTCCCCTCCTTAC
ATCTCACTAATCTCTTCTCCTCCTCTCCCTGTATCTCCCGCCGGTCTTCG
GCGATTCTACGGCGTCACCATCGCCTTCGGCCTCCGCCGACTCTGACTGC
TGGATTCTCCGCTCAGAGCGCGGCGTCTAGTCCGCCGGAAACCGATGACA
AAGTCGTGGAAATCGAGAAGAACCGAGCGAGTCAAGACCGAGGCAACCGG
GAACGAGTCATCACGCCAAGGTCGCAGGACTTCAATGCTTGGTACCTCGA
TGTTATTTCCAACGCGGAGCTTGCTGATTACGGTCCGGTCCGTGGGACCA
TGGTTATTAGGCCTTACGGATACGCTATTTGGGAGGCAATTCAGGATTAT
TTGAATGTAAAGTTCAAGGAGACAGGGCACAGTAACATGTACTTCCCACA
GTTTATACCATACTCCTTCATCGAGAAAGAAGCCAGCCATGTTGAGGGAT
TCAGTCCAGAATTGGCTCTTGTAACTATTGGAGGTGGAAAGGAACTAGAA
GAAAAACTTGTGGCTGTAACAGGTTCGACCTACAAGTGAAACAATTGTAA
ATCACATGTTTACTCAGTGGATTCATAGTTATCGCGATCTTCCTCTCCTG
GTTAACCAGTGGGCAAATGTCACACGATGGGAGATGCGCACAAAACCATT
TGTGAGAACCCTTGAATTTCTATGGCAGGAGGGCCATACTGCTCATGCCA
CTCCAGAAGAGGCAGAGAAAGAGGCAATGCAGATGATTGATATTTACACA
AAGTTTGCTTATGAGCATACTGCAATACCCGTTATTGCTGGTCGAAAATC
GAAAGTGGAAACTTTTGCTGGTGCTTCAAGGACCTACACCATAGAGGCTA
TGATGGGTGATAAG
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