FC877937
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27 Identity = 77/276 (27.90%), Postives = 135/276 (48.91%), Query Frame = 1 Query: 88 NVTAKVH--PLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLN 876 ++ AKV PLV+F I D Y RRP +V+GTLLG D ++I N + VPH E S+ ++ LD+ Y +L+ ++ P E ++GWF TG V+ ++LIH++Y RE P+HL VD +N + + Y +V + + F +PL++ ++ V ++ S + +E + +++ +I +Y++D + + PDN VGR L + ++P F + N + + QL ++EKL+ Sbjct: 6 SIRAKVFLKPLVLFQIIDAYDRRPKGDNQVMGTLLGRTKEDH-IEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLVAVRCIEKQSQQQASKQMERFVPELVQVVDATRNIQQRLDLLLRYINDVLARKKKPDNLVGRSLQAALTAVPLFDSEKFRLMFNTNVRDMLMAITLSTMIKTQLEISEKLS 280
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EIF3F_NEUCR (Eukaryotic translation initiation factor 3 subunit F OS=Neurospora crassa GN=1A9.200 PE=3 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 7.219e-27 Identity = 87/293 (29.69%), Postives = 147/293 (50.17%), Query Frame = 1 Query: 52 VLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDILKSTSVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLNTA 882 VL FG S+A +T + P +F+I D VRR D Q+ RVIG L+G DG+ V++R+++ +PH E DQV +D+EY ML LK NP+E ++GW++T + SALI F+ P+P VHLT+ T K Y+S +++ + A F E+P L +AER + + + + + SD+E + +E + L+ + +V + ++ ++++G+ L ++ PK+S A + N R Q+ L+++L TA Sbjct: 19 VLGFGVSNAP---LTVNIQPQAVFSIIDHAVRRDDRDTQSTRVIGALVGVRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKANPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTIGTE-AGATIDTKTYISAPVAVSPERAAESCLFIEVPHKLLFTDAERGALGSVAAAADAESRSAPVVSDIENLAQALETVSDLLERVSGFVGEVLDEERDGNHALGQYLMNALSLAPKVSNLAIENDFNNHIQDVLMVSYLANTIRTQIELSQRLATA 307
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EI3F2_DROVI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila virilis GN=eIF3-S5-2 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.608e-26 Identity = 82/274 (29.93%), Postives = 132/274 (48.18%), Query Frame = 1 Query: 100 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSV-LPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIP-LDLRMIEAERVGFDILKSTSVD-------KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLN 876 ++ PLV+F I Y RRP A+ +GTLLG + ++I NSY V H E +Q LD +Y M + + PQE I+GW+STG ++ +A +H +Y RE + P+HL VDT R G + + Y V + + F +P L L E V +++ ++ LP + ME E L + + +Y++D + + PDNS+GR L + + S+P L +F + N + + Q+ L+EKL+ Sbjct: 13 RLQPLVLFQIIAAYERRPKTAKMAVGTLLGRRDRCNDIIEITNSYTVQHKEQQIGEMEQFKLDTQYASEMFELNQITYPQEKIIGWYSTGKSLSRSAAALHAYYSRECGDVQPLHLLVDTTLRGGHLSTRLYCGVTMGVPGGTRGLLFTLLPLLKLNTDGDESVALRLMQKQALHPTKQLGRMLPELVHVMEATRE-LEQKLELVMRYINDVLARKRRPDNSIGRALHDALTSVPLLDAESFRLMFNANVRNMLMSITLSTMIKTQMELSEKLS 285
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EI3F2_DROMO (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila mojavensis GN=eIF3-S5-2 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.608e-26 Identity = 82/274 (29.93%), Postives = 133/274 (48.54%), Query Frame = 1 Query: 100 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSV-LPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEA-ERVGFDILKSTSVD-------KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLN 876 ++ PLV+F I Y RRP A+ +GTLLG + ++I NSY V H E +Q LD +Y M + + PQE I+GW+ TG ++ +A +H +Y RE + P+HL VDT R G T + Y +V + + F +PL E E V +++ ++ LP + ME E L ++ + +Y++D + + PDNS+GR L + + S+P L +F + N + + Q+ L+EKL+ Sbjct: 13 RLQPLVLFQIIAAYERRPKTAKMAVGTLLGRRDRCNDIIEITNSYTVQHKEQQIGDMEQFKLDTQYASEMFELNQVTYPQEKIIGWYCTGKTLSRSAAALHGYYSRECGDMQPLHLLVDTSLRGGRLTTRLYCAVTMGVPGGTRGLLFTLLPLLKVNAEGDEAVALRLMQKQALHPTKQLGRMLPELVHVMEATRE-LEQKLDLVMRYINDVLTRKRRPDNSIGRALHDALTSVPLLDADSFRAMFNANVRNMLMSITLSSMIKTQMELSEKLS 285
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EI3F2_DROYA (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila yakuba GN=eIF3-S5-2 PE=3 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26 Identity = 75/272 (27.57%), Postives = 132/272 (48.53%), Query Frame = 1 Query: 103 VHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLIND----------IYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLN 876 + PLV+F I D Y RRP +V+GTLLG +G +I N + VPH E + ++ LDI Y L+ ++ E ++GWFSTG V+ ++L+H++Y RE PVHL +D ++ + + Y +V + + F +PL++ ++ V L+S L + ME + L+ +++ + +Y++D + + PDN +GR L + ++P L F + N + + QL ++EKL+ Sbjct: 13 IKPLVLFQIIDAYERRPKGDNQVMGTLLGRN-KEGHFEITNCFPVPHKEHPEINRIDLDISYASEFLELNMLTYSNERVLGWFSTGKSVSRSASLLHDYYARECGEIQPVHLVMDATLKSQRLSTRLYCAVEIGVPGGTKGLMFSLVPLEISNGNSDLVA---LRSLEKQSLQQGTKQMERFLPELVQVVDATRDIQQRLDLVLRYINDVLARKRKPDNVIGRALYAALTAVPLLDSEKFRLMFNTNLRDMLMAITLSTMIKTQLEISEKLS 280
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26 Identity = 80/282 (28.37%), Postives = 134/282 (47.52%), Query Frame = 1 Query: 73 SAATSNVTAKV--HPLVIFNICDCYVRRPDQAERVIGTLLGSVL-PDGTVDIRNSYVVPHNEFSDQ---VALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD------ILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLN 876 S + N+ +KV HPLV+F I D Y RR V+GTLLG V G ++I N + V H D + LD++Y + ML+ PQE +VGWFSTG V+ + +HE+Y R+ + P+HL +DT R + + +V + F +P+D+ + V L +L +LE + + + ++ + +Y++D + + PDN+VGR L + + S+P + F + N + + QL L+E+L+ Sbjct: 2 SLSNFNLQSKVLLHPLVLFQIIDAYERRAKDVPEVLGTLLGIVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVVGWFSTGKAVSAAAVELHEYYERQCHSGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQCALPPKEAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTSVPMVEAERFRHMFNTNMRDLLMSLTLSSMIKVQLQLSERLS 283
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EIF3F_YARLI (Eukaryotic translation initiation factor 3 subunit F OS=Yarrowia lipolytica GN=YALI0E26851g PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25 Identity = 80/282 (28.37%), Postives = 135/282 (47.87%), Query Frame = 1 Query: 70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRM---IEAERVGFDILKSTSVD-----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNS--VGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLNT 879 ++ A ++VT L F I D +RR ++ +VIGTL+G DG+ V++RN+Y VPH+E ++ +D+EY+ TML H K P+EVIVGW++T + S LIH++Y + P +HLTV+ + YV+ + + + + +P+ + A+R + + S L SDL +E + ++L ++ + YV + G + + VG+ L T+ P L + L N + QL L+ KL T Sbjct: 13 TNGAPTHVTVTAQAL--FQILDHALRREEEQSKVIGTLVGIRSEDGSEVEVRNAYAVPHSESEQEMTIDLEYNPTMLALHRKAFPKEVIVGWYATSSELNTFSGLIHDYYTQLDGTPAIHLTVEAANLADTLLPRTYVASAVGIDPSKNSGNCVFVPISNEVKFNDSADRAALEAISSARESPERSINLTSDLANLENSLTQVLDMLERVQTYVARVISGEESSEKAQQVGKQLLSTLTLTPSLDAQNLEALFNSHLQDVLMVVYLANTVKTQLQLSAKLTT 292
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EI3F2_DROGR (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila grimshawi GN=eIF3-S5-2 PE=3 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25 Identity = 80/274 (29.20%), Postives = 133/274 (48.54%), Query Frame = 1 Query: 100 KVHPLVIFNICDCYVRRPDQAERVIGTLLG-SVLPDGTVDIRNSYVVPHNEFS----DQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEA-ERVGFDILKSTSVDK-------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLN 876 ++ PLV+F I Y RP AE +GTLLG + T++I NSY+V H +QV LD +Y M + + NPQE IVGW++T ++ SA +H +Y RE + P+HL VD R G + Y V + + F +PL E + V ++++ +++ LP + +E+ + L ++ + +Y+ D + + +PD VGR L E + S+P + +F + N + + QL L+EKL+ Sbjct: 13 RLQPLVLFQIISAYEHRPKLAEVAVGTLLGLRDRSNDTIEITNSYMVIHKTQQIGEMEQVKLDKQYASEMYELNQINNPQEKIVGWYNTAKSLSRSSAALHAYYARECADAQPLHLLVDLKLRGGRLNTRLYCGVPIGVPGGTKGLMFTLLPLLKMGTEIDDSVALRVMQNYALNPAKQPGRILPELMSVLEITL-ALEEKLDLLLRYIKDVLARKRLPDKRVGRALYEALTSVPMMDAESFRLMFNTNVRDILLSITLSTMIKTQLELSEKLS 285
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EIF3F_CHAGB (Eukaryotic translation initiation factor 3 subunit F OS=Chaetomium globosum GN=CHGG_00662 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 6.757e-25 Identity = 81/280 (28.93%), Postives = 137/280 (48.93%), Query Frame = 1 Query: 91 VTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDILKS---TSVDKLP--SDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRNQLSLAEKLNTA 882 +T + P +F++ D VRR Q+ RVIG L+G+ DG+ V++R+++ +PH E DQV +D+EY ML LK +P+E ++GW++T + SALI F+ P+P VHLT+ T KAY+S +++ + A F E+P L +AER + T P SD+E + +E + L+ + +V + ++ +++G+ L ++ PK+S + N R Q+ LA++L TA Sbjct: 28 LTVHIQPQAVFSVIDHAVRRDTRDTQSTRVIGALVGTRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKASPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTISTE-PGAPIATKAYISAPVAVSPERAAESCLFIEVPHKLLFSDAERAALGTATAAAETEARSAPVISDIETLAQSLESVSDLLERVSGFVGEVLDEERDGSHALGQYLMNALSLAPKVSATQIEADFNNHVQDVLMVSYLANTIRTQIDLAQRLATA 306
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: EIF3F_CRYNE (Eukaryotic translation initiation factor 3 subunit F OS=Cryptococcus neoformans GN=CNF04540 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23 Identity = 82/241 (34.02%), Postives = 125/241 (51.87%), Query Frame = 1 Query: 55 LQFGPSSAAT---SNVTAKVHPLVIFNICDCYVRRPDQAE--RVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV-PNP-VHLTVDTGF-RNGEGT-VKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS--DLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSE 741 LQ P+S++ S +T VHP VI I + R +E RVIG L+G+ +G VDIR+ + VPH E Q+++D + M+ K +EVIVGW+++ V SA+I E++ E P P VHLTVDT +G+G VK +VS L L + + F +P+ ++ ++ER D+L + P+ L + + +L +LI+ YV G PD +GR L E Sbjct: 12 LQLPPTSSSLRPPSQIT--VHPSVIAQILTHHSRHSADSESTRVIGALMGNRSDNGQEVDIRSCFAVPHTEQGQQISVDRPFQQDMVNFLAKNGTKEVIVGWYASQKTVNSNSAIIQEYFSFETNPYPAVHLTVDTDIEESGKGLGVKGWVSQPLGLTSKSECSVFVPVPVSIKYADSERAALDLLTAPQPTPSPALPPLPTLSNSLSQLSSLIDQCLAYVQSVNNGSQTPDVEIGRYLLE 250 The following BLAST results are available for this feature:
BLAST of FC877937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877937 ID=FC877937; Name=FC877937; organism=Citrus clementina; type=EST; length=884bpback to top |