FC877937

Overview
NameFC877937
Unique NameFC877937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 62/243 (25.51%), Postives = 112/243 (46.09%), Query Frame = 1
Query:   73 SAATSNVTAK---VHPLVIFNICDCYVRRPDQAER-VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKL 765
            S+ TS +  +   VHPLV+ +  D Y R     +R V+G LLG    D  V++ NSY +P  E     +   LD  +  +M +   K+N  E +VGW+ TG  +      I+    + +PNPV + +D   ++      AY +++    D   +++ F  +P  +   EAE +G + L    +  SV  L + +      ++ L   + +I  Y+   V+G+   ++++   L      LP +
Sbjct:    6 SSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGD-VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNI 247          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 63/259 (24.32%), Postives = 118/259 (45.56%), Query Frame = 1
Query:   43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780
            D  V+    +S  T +V+  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +  +   +++ +D EY++T  +   +V  +   +GW++TG         +H+  C  + +P+ L ++   ++ +  V  + SV + + + +    F E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV  +  G    ++ + R        LP LS   F
Sbjct:   24 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 276          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 63/259 (24.32%), Postives = 118/259 (45.56%), Query Frame = 1
Query:   43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780
            D  V+    +S  T +V+  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +  +   +++ +D EY++T  +   +V  +   +GW++TG         +H+  C  + +P+ L ++   ++ +  V  + SV + + + +    F E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV  +  G    ++ + R        LP LS   F
Sbjct:   19 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 271          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 63/259 (24.32%), Postives = 118/259 (45.56%), Query Frame = 1
Query:   43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780
            D  V+    +S  T +V+  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +  +   +++ +D EY++T  +   +V  +   +GW++TG         +H+  C  + +P+ L ++   ++ +  V  + SV + + + +    F E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV  +  G    ++ + R        LP LS   F
Sbjct:   20 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 272          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 61/250 (24.40%), Postives = 115/250 (46.00%), Query Frame = 1
Query:   70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780
            +S  T +V+  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +  +   +++ +D EY++T  +   +V  +   +GW++TG         +H+  C  + +P+ L ++   ++ +  V  + SV + + + +    F E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV  +  G    ++ + R        LP LS   F
Sbjct:   29 ASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 272          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 62/259 (23.94%), Postives = 117/259 (45.17%), Query Frame = 1
Query:   43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780
            D  V+    +   T +V+  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +  +   +++ +D EY++T  +   +V  +   +GW++TG         +H+  C  + +P+ L ++   ++ +  V  + SV + + + +    F E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV  +  G    ++ + R        LP LS   F
Sbjct:   23 DAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 275          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 65/251 (25.90%), Postives = 113/251 (45.02%), Query Frame = 1
Query:   70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDN-SVGRILSETVASLPKLSPPAF 780
            +   T +VT  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +      +++ ++ EY++T  +   +V      +GW++TG         +H+  C  + +P+ L ++   ++ +  V  Y SV + + + +      E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV    EG  VP N  + R  S     LP LS   F
Sbjct:   23 AQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VRLILEYV-RAAEGGEVPFNHEILREASALCHCLPVLSTDKF 266          
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 61/250 (24.40%), Postives = 111/250 (44.40%), Query Frame = 1
Query:   70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780
            +   T +VT  +HPLVI NI D ++R   Q  R   VIG L+G       +++ NS+ +      +++ ++ EY++T  +   +V      +GW++TG         +H+  C  + +P+ L ++   ++ +  V  Y SV + + + +      E+   L   EAER+G D +           ST  + L +    +++L  R    +  I +YV     G    ++ + R  S     LP LS   F
Sbjct:   24 AQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSQINEEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VRLILEYVRAAEAGEVPFNHEILREASALCHCLPVLSTDKF 267          
The following BLAST results are available for this feature:
BLAST of FC877937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RPN8_SCHPO5.933e-1325.5126S proteasome regulatory subunit rpn8 OS=Schizosa... [more]
CSN6_PONAB7.749e-1324.32COP9 signalosome complex subunit 6 OS=Pongo abelii... [more]
CSN6_PIG7.749e-1324.32COP9 signalosome complex subunit 6 OS=Sus scrofa G... [more]
CSN6_BOVIN1.012e-1224.32COP9 signalosome complex subunit 6 OS=Bos taurus G... [more]
CSN6_MOUSE1.322e-1224.40COP9 signalosome complex subunit 6 OS=Mus musculus... [more]
CSN6_HUMAN2.945e-1223.94COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
CSN6_XENLA6.560e-1225.90COP9 signalosome complex subunit 6 OS=Xenopus laev... [more]
CSN6_XENTR8.568e-1224.40COP9 signalosome complex subunit 6 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877937 ID=FC877937; Name=FC877937; organism=Citrus clementina; type=EST; length=884bp
AGATCAGAAGAGAAGAAGAAGAAGATAAGAATGGCGGCAAGCGACCGCAC
GGTGCTGCAATTCGGACCTTCATCAGCGGCGACGTCGAATGTAACGGCGA
AAGTTCACCCGTTGGTTATTTTCAACATCTGCGACTGTTACGTCAGACGC
CCCGACCAGGCTGAACGCGTCATCGGCACGCTTCTTGGCTCCGTTTTGCC
CGATGGCACCGTCGATATCCGTAACTCCTACGTCGTTCCTCACAACGAGT
TCTCCGATCAGGTTGCATTGGATATTGAATACCATCATACCATGTTAAAG
TCACATCTAAAGGTGAATCCTCAGGAAGTGATTGTTGGATGGTTTTCTAC
AGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCATGAATTCTATTGTC
GCGAAGTCCCTAATCCTGTCCACCTGACTGTAGATACAGGATTCAGAAAT
GGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAATTTGTCTCTTGGAGA
TCGACAGCTTGCTGCACAATTTCAAGAAATCCCTCTTGATCTTCGAATGA
TTGAAGCTGAGCGAGTTGGATTCGATATTCTGAAGTCAACATCGGTTGAC
AAACTCCCTAGTGATTTGGAAGGAATGGAAGTCCTGATGGAACGGCTACT
AACTCTTATTAACGATATCTACAAATATGTTGATGACACTGTGGAAGGGC
GTGCTGTACCTGATAATAGTGTAGGGCGTATTCTTTCAGAGACTGTAGCC
TCCCTTCCCAAACTGTCACCTCCAGCTTTTGACAAGCTTGTAAATGACAG
CCTACAGGACCAGTTGCTCTTGCTATATTTGTCAAGTATCACCAGGAACC
AGCTCAGCTTAGCAGAAAAGTTGAACACTGCTGC
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