FC877937
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13 Identity = 62/243 (25.51%), Postives = 112/243 (46.09%), Query Frame = 1 Query: 73 SAATSNVTAK---VHPLVIFNICDCYVRRPDQAER-VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKL 765 S+ TS + + VHPLV+ + D Y R +R V+G LLG D V++ NSY +P E + LD + +M + K+N E +VGW+ TG + I+ + +PNPV + +D ++ AY +++ D +++ F +P + EAE +G + L + SV L + + ++ L + +I Y+ V+G+ ++++ L LP + Sbjct: 6 SSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGD-VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNI 247
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13 Identity = 63/259 (24.32%), Postives = 118/259 (45.56%), Query Frame = 1 Query: 43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780 D V+ +S T +V+ +HPLVI NI D ++R Q R VIG L+G +++ NS+ + + +++ +D EY++T + +V + +GW++TG +H+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D + ST + L + +++L R + I +YV + G ++ + R LP LS F Sbjct: 24 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 276
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13 Identity = 63/259 (24.32%), Postives = 118/259 (45.56%), Query Frame = 1 Query: 43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780 D V+ +S T +V+ +HPLVI NI D ++R Q R VIG L+G +++ NS+ + + +++ +D EY++T + +V + +GW++TG +H+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D + ST + L + +++L R + I +YV + G ++ + R LP LS F Sbjct: 19 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 271
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12 Identity = 63/259 (24.32%), Postives = 118/259 (45.56%), Query Frame = 1 Query: 43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780 D V+ +S T +V+ +HPLVI NI D ++R Q R VIG L+G +++ NS+ + + +++ +D EY++T + +V + +GW++TG +H+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D + ST + L + +++L R + I +YV + G ++ + R LP LS F Sbjct: 20 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 272
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12 Identity = 61/250 (24.40%), Postives = 115/250 (46.00%), Query Frame = 1 Query: 70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780 +S T +V+ +HPLVI NI D ++R Q R VIG L+G +++ NS+ + + +++ +D EY++T + +V + +GW++TG +H+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D + ST + L + +++L R + I +YV + G ++ + R LP LS F Sbjct: 29 ASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 272
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12 Identity = 62/259 (23.94%), Postives = 117/259 (45.17%), Query Frame = 1 Query: 43 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780 D V+ + T +V+ +HPLVI NI D ++R Q R VIG L+G +++ NS+ + + +++ +D EY++T + +V + +GW++TG +H+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D + ST + L + +++L R + I +YV + G ++ + R LP LS F Sbjct: 23 DAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKF 275
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12 Identity = 65/251 (25.90%), Postives = 113/251 (45.02%), Query Frame = 1 Query: 70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDN-SVGRILSETVASLPKLSPPAF 780 + T +VT +HPLVI NI D ++R Q R VIG L+G +++ NS+ + +++ ++ EY++T + +V +GW++TG +H+ C + +P+ L ++ ++ + V Y SV + + + + E+ L EAER+G D + ST + L + +++L R + I +YV EG VP N + R S LP LS F Sbjct: 23 AQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQ-EGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VRLILEYV-RAAEGGEVPFNHEILREASALCHCLPVLSTDKF 266
BLAST of FC877937 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12 Identity = 61/250 (24.40%), Postives = 111/250 (44.40%), Query Frame = 1 Query: 70 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----------KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAF 780 + T +VT +HPLVI NI D ++R Q R VIG L+G +++ NS+ + +++ ++ EY++T + +V +GW++TG +H+ C + +P+ L ++ ++ + V Y SV + + + + E+ L EAER+G D + ST + L + +++L R + I +YV G ++ + R S LP LS F Sbjct: 24 AQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ-EGRNIEVMNSFELLSQINEEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSR----VRLILEYVRAAEAGEVPFNHEILREASALCHCLPVLSTDKF 267 The following BLAST results are available for this feature:
BLAST of FC877937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877937 ID=FC877937; Name=FC877937; organism=Citrus clementina; type=EST; length=884bpback to top |