FC877938

Overview
NameFC877938
Unique NameFC877938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11531 contig Ccv1_Contig11531:118..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: YEH1_SCHPO (Oxysterol-binding protein homolog C23H4.01c OS=Schizosaccharomyces pombe GN=SPAC23H4.01c PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.539e-22
Identity = 65/189 (34.39%), Postives = 111/189 (58.73%), Query Frame = 1
Query:  250 MMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY----FAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            +++K IG D+ S +  PV  +EP ++LQR AE +EYS++LD A+EC+D  +++ Y +++A+S +       R   K F+P+LGETFE+V       F+AE+V H P + A HAE+ ++I++ + K   KF G S+++  +G   + L   G     + P   + N+  G  +++    M + + TTGDK
Sbjct:  576 ILRKNIGKDISS-IPAPVVSNEPCNLLQRCAEDLEYSNMLDKANECDDD-IKIFYVAAFAVSNFSNMRHKERSVRKVFSPLLGETFELVREDRNYRFLAEKVCHRPLIIACHAESRNWIWNHSPKPIQKFWGKSVELNTLGPVTIKL-ACGTEFSFMKPACFLKNVAIGEKYVEPYDHMEIVDETTGDK 761          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSH3_YEAST (Oxysterol-binding protein homolog 3 OS=Saccharomyces cerevisiae GN=OSH3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 65/188 (34.57%), Postives = 102/188 (54.26%), Query Frame = 1
Query:  253 MQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAW----KPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK 801
            ++K +G D+ S + +PV  +EP S+LQ ++E  EY+ LL  A +  DP   + + S++A+S    YR       KPFNP+L ETFE++    G   I+E+VSH PP+ A  AE+  +    T     KF G SI++   G  R+  K  G + +   P T + NLI G  +++ P +    + + GDK
Sbjct:  647 LRKNVGKDLSS-IAMPVTSNEPISILQLISETFEYAPLLTKATQRPDP---ITFVSAFAISFLSIYRDKTRTLRKPFNPLLAETFELIREDMGFRLISEKVSHRPPVFAFFAEHLDWECSYTVTPSQKFWGKSIELNNEGILRLKFKTTGELFEWTQPTTILKNLIAGERYME-PVNEFEVHSSKGDK 829          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL8_HUMAN (Oxysterol-binding protein-related protein 8 OS=Homo sapiens GN=OSBPL8 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 60/199 (30.15%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  223 QEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAW-KPFNPVLGETFEMV-----NHGGVTFIAEQVSHHPPMSAGHAEN--EHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTG 795
            +E +   W ++++       S V LP FI EP S L ++++   ++  L  A   E+PY RL     W LS ++   +   KP+NP+LGETF  +      +    +IAEQVSHHPP+SA +  N  + F    +   ++KF GNS+     G  R+T    G    +  P      +++G   ++  G + +T   TG
Sbjct:  401 EENKSLIWTLLKQVRPGMDLSKVVLPTFILEPRSFLDKLSDYYYHADFLSEAALEENPYFRLKKVVKWYLSGFYKKPKGLKKPYNPILGETFRCLWIHPRTNSKTFYIAEQVSHHPPISAFYVSNRKDGFCLSGSILAKSKFYGNSLSAILEGEARLTFLNRGEDYVMTMPYAHCKGILYGTMTLELGGTVNITCQKTG 599          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL9_PONAB (Oxysterol-binding protein-related protein 9 OS=Pongo abelii GN=OSBPL9 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.374e-18
Identity = 73/233 (31.33%), Postives = 114/233 (48.93%), Query Frame = 1
Query:  178 STEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF--------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTG 795
            S +D +D+A  G  ++ +      + Q  +G D+  +V LP FI E  S+L+  A+   +  L     + +DP  R+V    W LS + A R+   A KP+NP+LGE F              E+V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+  V+   D     ++  P      IF   W++  G+  +    TG
Sbjct:  355 SHDDRDDDAEAGSVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCYWTLPNDTEENTELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSC-LDYDEHYILTFPNGYGRSIFTVPWVELGGECNINCSKTG 585          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL9_HUMAN (Oxysterol-binding protein-related protein 9 OS=Homo sapiens GN=OSBPL9 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  178 STEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF--------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGR 660
            S +D +D+A  G  ++ +      + Q  +G D+  +V LP FI E  S+L+  A+   +  L     + +DP  R+V    W LS + A R+   A KP+NP+LGE F              E+V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+
Sbjct:  355 SHDDRDDDAEAGSVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCHWTLPNDTEENTELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQ 541          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL9_MOUSE (Oxysterol-binding protein-related protein 9 OS=Mus musculus GN=Osbpl9 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.049e-18
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  178 STEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF--------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGR 660
            S +D +D+   G  ++ +      + Q  +G D+  +V LP FI E  S+L+  A+   +  L     + +DP  R+V    W LS + A RR   A KP+NP+LGE F              E+V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+
Sbjct:  355 SHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPRDRMVQVVKWYLSAFHAGRRGSVAKKPYNPILGEIFQCHWTLPNDTEENAELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQ 541          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL9_XENTR (Oxysterol-binding protein-related protein 9 OS=Xenopus tropicalis GN=osbpl9 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 64/189 (33.86%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  181 TEDAEDEARRGRWKQEERDNYWKMM-QKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF---------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGR 660
            T D  D+   G   +E +     ++ Q  +G D+  +V LP FI E  S+L+  A+   +  L     E +DP  R+     W LS + A R+   A KP+NP+LGE F               E V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+
Sbjct:  357 THDDRDDDGEGESVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSIGEHKDPKDRMAQVVKWYLSAFHAGRKGSVAKKPYNPILGEVFQCHWALPGLENDENPEAVSEGPIPWASKNNVTFVAEQVSHHPPISAFYAECYNKRIQFNAHIWTKSKFLGMSIGVHNIGQ 544          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL5_MOUSE (Oxysterol-binding protein-related protein 5 OS=Mus musculus GN=Osbpl5 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  223 QEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEM-----VNHGGVTFIAEQVSHHPPMSAGHAEN--EHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPG 765
            +E +   W ++++       S V LP F+ EP S L ++++   +  LL  A   +DPY R+     W LS  Y   +   KP+NP+LGETF         +    +IAEQVSHHPP+SA +  N  + F    +   ++KF GNS+     G+ ++T         L  P      +++G   ++  G
Sbjct:  364 EENKSLMWVLLRQLRPGMDLSRVVLPTFVLEPRSFLGKLSDYYYHGDLLSRAAAEDDPYCRMKLVLRWYLSGFYKKPKGIKKPYNPILGETFRCRWLHPQTNSHTFYIAEQVSHHPPVSAFYVSNRKDGFCMSGSITAKSKFYGNSLSALLDGKAKLTFLNRKEEYTLTMPYAHCRGILYGTMTMELGG 552          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSBL5_HUMAN (Oxysterol-binding protein-related protein 5 OS=Homo sapiens GN=OSBPL5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  223 QEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMV-----NHGGVTFIAEQVSHHPPMSAGHAEN--EHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 777
            +E +   W ++++       S V LP F+ EP S L ++++   ++ LL  A   ED Y R+     W LS  Y   +   KP+NP+LGETF              +IAEQVSHHPP+SA H  N  + F    +   +++F GNS+     G+  +T         L  P      +++G   ++  G + +
Sbjct:  365 EENKSLMWTLLKQLRPGMDLSRVVLPTFVLEPRSFLNKLSDYYYHADLLSRAAVEEDAYSRMKLVLRWYLSGFYKKPKGIKKPYNPILGETFRCCWFHPQTDSRTFYIAEQVSHHPPVSAFHVSNRKDGFCISGSITAKSRFYGNSLSALLDGKATLTFLNRAEDYTLTMPYAHCKGILYGTMTLELGGKVTI 557          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSB4_DICDI (Oxysterol-binding protein 4 OS=Dictyostelium discoideum GN=osbD PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 63/189 (33.33%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  265 IGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR--AWKPFNPVLGETFE-----MVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKL--RTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKV 804
            IG D+ S V LP FI EP S+L++  + M +  +L    + E P  R+   + W LS  F YR+    KP+NP+LGE F         +     +AEQ+SHHPP+S  +  N    Y +T  +  R+KFLGNS+ V   G + +TL        +  P      +IFG    +  G+  ++   T  KV
Sbjct:   87 IGVDL-SRVPLPTFILEPRSLLEKFTDNMIHGEILCNLSKLESPMDRMHLITKWYLSA-FHYRKKGLQKPYNPILGEIFRTRWEFKETNSNCIMVAEQISHHPPVSCIYLSNRKDGYTMTGTINPRSKFLGNSMAVIVDGSSTLTLLGLQEEYVITFPTAVARGIIFGTLLTEIVGNSTISCKQTNIKV 273          
The following BLAST results are available for this feature:
BLAST of FC877938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
YEH1_SCHPO3.539e-2234.39Oxysterol-binding protein homolog C23H4.01c OS=Sch... [more]
OSH3_YEAST1.644e-1934.57Oxysterol-binding protein homolog 3 OS=Saccharomyc... [more]
OSBL8_HUMAN1.391e-1830.15Oxysterol-binding protein-related protein 8 OS=Hom... [more]
OSBL9_PONAB2.374e-1831.33Oxysterol-binding protein-related protein 9 OS=Pon... [more]
OSBL9_HUMAN3.100e-1834.04Oxysterol-binding protein-related protein 9 OS=Hom... [more]
OSBL9_MOUSE4.049e-1834.04Oxysterol-binding protein-related protein 9 OS=Mus... [more]
OSBL9_XENTR7.635e-1733.86Oxysterol-binding protein-related protein 9 OS=Xen... [more]
OSBL5_MOUSE7.635e-1729.63Oxysterol-binding protein-related protein 5 OS=Mus... [more]
OSBL5_HUMAN9.972e-1729.02Oxysterol-binding protein-related protein 5 OS=Hom... [more]
OSB4_DICDI9.972e-1733.33Oxysterol-binding protein 4 OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA5AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877938 ID=FC877938; Name=FC877938; organism=Citrus clementina; type=EST; length=806bp
CTGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATGG
ATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCGA
CTATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGAA
GGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATGA
AGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAGA
TGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCCT
GTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGAT
GGAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCATACA
TGAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTAT
CGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAAT
GGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCACC
CCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGATGTG
ACTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATCC
AGTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCGATT
TGGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACTTGG
ATTGATTCACCGGGGGATATGGTCATGACTAACTTGACCACGGGCGACAA
AGTTGT
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