FC877938

Overview
NameFC877938
Unique NameFC877938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OBPAL_CANAL (Oxysterol-binding protein-like protein OBPalpha OS=Candida albicans GN=OBPALPHA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 1
Query:  154 LEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYI------------GADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWAL-SIYFAYRRAWKPFNPVLGETF-----EMVNHGGVTFIAEQVSHHPPMSAGH--AENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL-KRDGVVLDLVPPPTKVHNLIFGR 744
            L+ +  + ++ED ED++  G  K +  D+  ++  +Y             G D+ S +TLP FI E  S+L+R+    +   LL  ++  EDP  R +    W L S + + +   KP NPVLGE F     E+ N+    +++EQ+SHHPP S+       E    D     +++FLGNS      G   VTL K D  V  +  P   V  ++FG+
Sbjct:    7 LDKLKLKTTSEDIEDDS--GHAKPDNSDDIDEVDSEYQNILLSIIAQLRPGMDL-SKITLPTFILEKKSMLERITNFFQIPKLLIDSNSIEDPLDRFIGVLRWYLASWHISPKAVKKPLNPVLGEVFTCYWDELPNNKSAYYLSEQISHHPPKSSYFYIMPEEKIRVDGVVIPKSRFLGNSSAAIMEGCGYVTLGKWDNEVYVMNQPNVYVRGILFGK 221          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OBPA_CANAL (Oxysterol-binding protein-like protein OBPa OS=Candida albicans GN=OBPA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 56/186 (30.11%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  283 SLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWAL-SIYFAYRRAWKPFNPVLGETF-----EMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKL--------RTKFLGNSIDVYPVGRTRVTL-KRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTG 795
            S +TLP FI E  S+L+R+    +   +L  A+   D   R V   +W L S + A +   KP NPVLGETF      + +     +I+EQVSHHPP S+      +F     +K+        +++FLGNS      G   +TL + +  V ++  P      ++FG+  ++    M +    TG
Sbjct:   63 SRITLPTFILEKKSMLERITNFFQIPDMLLKANRTSDDVERFVSVLAWYLASWHIAPKAVKKPLNPVLGETFNCYWENISDDCSAYYISEQVSHHPPKSS------YFYLVPEAKIKVDGILIPKSRFLGNSSAAMMEGWAHLTLGEHENEVYEMNQPNVYCRGILFGKMKMELGDHMYVKCRKTG 242          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: YJX1_SCHPO (Oxysterol-binding protein homolog C23B6.01c OS=Schizosaccharomyces pombe GN=SPCC23B6.01c PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 55/176 (31.25%), Postives = 74/176 (42.05%), Query Frame = 1
Query:  283 SLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLV-----YASSWALSIYFAYRRAWKPFNPVLGETFE---------------MVNHGGVTFIAEQVSHHPPMSAGH--AENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGR 744
            S VT P F+ EP S+L+R+   M +  LL    +  DP MR +     Y S W    +   R   KP NP+LGETF                   HG   + AEQV HHPP+SA            D   K R++FLGNS      G   + L+       +  P      ++FG+
Sbjct:   45 SKVTFPTFVLEPKSMLERITNFMSHPDLLLNVQKTADPEMRFLDVVRFYMSGW----HIRPRGVKKPLNPILGETFTGFWKFPPSNSKDPNLQKLHGIAVYAAEQVCHHPPISAYFYLCPEYKVRIDGVVKPRSRFLGNSAASIMEGIASIKLQDLDEEYLITQPNVYARGILFGK 216          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSH6_YEAST (Oxysterol-binding protein homolog 6 OS=Saccharomyces cerevisiae GN=OSH6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 56/182 (30.77%), Postives = 84/182 (46.15%), Query Frame = 1
Query:  289 VTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETF----EMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLR--------TKFLGNSIDVYPVGRTRVTLK--RDG----VVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 777
            +TLP FI E  S+L+R+   +++   L  A   +DP  R +Y   W L+  + A +   KP NPVLGE F    ++ N     +I+EQ SHHPP      E  +F     S +R        ++FLGNS      G T +     +DG        L  P   V  ++FG+  I+    M++
Sbjct:   67 ITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIAPKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPP------ECAYFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHMII 242          
BLAST of FC877938 vs. ExPASy Swiss-Prot
Match: OSH7_YEAST (Oxysterol-binding protein homolog 7 OS=Saccharomyces cerevisiae GN=OSH7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 1
Query:  100 TIGSAMSKSVNGLLGYEGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETF----EMVNHGGVTFIAEQVSHHPPMSAGH--AENEHFIYDVTSKLRTKFLGNS 636
            ++ ++   S+NG+         N + S  D +D        Q    N    ++   G D+ S +TLP FI E  S+L+R+   +++  +L  A   +D   R V   +W L+  +   R   KP NP+LGE F    ++ N     +IAEQ SHHPP SA        +   D     ++KFLGNS
Sbjct:   11 SLTNSSHSSINGIAS----NAANSKPSGADTDDIDENDESGQSILLNIISQLKP--GCDL-SRITLPTFILEKKSMLERITNQLQFPDVLLEAHSNKDGLQRFVKVVAWYLAGWHIGPRAVKKPLNPILGEHFTAYWDLPNKQQAFYIAEQTSHHPPESAYFYMIPESNIRVDGVVVPKSKFLGNS 189          
The following BLAST results are available for this feature:
BLAST of FC877938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OBPAL_CANAL9.334e-1530.73Oxysterol-binding protein-like protein OBPalpha OS... [more]
OBPA_CANAL1.946e-1230.11Oxysterol-binding protein-like protein OBPa OS=Can... [more]
YJX1_SCHPO4.336e-1231.25Oxysterol-binding protein homolog C23B6.01c OS=Sch... [more]
OSH6_YEAST1.648e-1130.77Oxysterol-binding protein homolog 6 OS=Saccharomyc... [more]
OSH7_YEAST8.177e-1130.11Oxysterol-binding protein homolog 7 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA5AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877938 ID=FC877938; Name=FC877938; organism=Citrus clementina; type=EST; length=806bp
CTGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATGG
ATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCGA
CTATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGAA
GGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATGA
AGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAGA
TGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCCT
GTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGAT
GGAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCATACA
TGAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTAT
CGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAAT
GGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCACC
CCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGATGTG
ACTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATCC
AGTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCGATT
TGGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACTTGG
ATTGATTCACCGGGGGATATGGTCATGACTAACTTGACCACGGGCGACAA
AGTTGT
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