FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_STRP1 (3-dehydroquinate synthase OS=Streptococcus pyogenes serotype M1 GN=aroB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 68/245 (27.76%), Postives = 108/245 (44.08%), Query Frame = 1
Query:   19 IHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSR 750
            +H    G ++KSL+  + I D +      +K+           D+ GF  A Y R   YI+IPTT++  +D+ +  KV V++    N +G+ + P   ++   FL TLP+ +   G +E++KI      P F  L +F +   K    R+       KK              ++   +  E GL   + +GHT    +  L       HG AI+I M   A LA  +GLL  E+   LL +F R
Sbjct:   65 VHVCPPGGQSKSLERVSAIYDQLIAENFSKKDMIVTIGGGVVGDLGGFVAATYYRGIPYIQIPTTLLSQVDSSIGGKVGVHFKGLTNMIGSIYPPEAIIISTTFLETLPQREFSCGISEMLKIGFIHDRPLFQQLRDFQKETDKQGLERLIYQSISNKK--------------RIVEQDEFENGLRMSLNFGHTLGHAIESLCHHDFYHHGEAIAIGMVVDAKLAVSKGLLPKEDLDSLLQVFER 295          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RUTMC (3-dehydroquinate synthase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=aroB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 72/243 (29.63%), Postives = 110/243 (45.27%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE--LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GEK K+LDT   I +++      R             D+ GFA A+Y+R  N+I+IPTT++  +D+ V  K  +N+   KN +G +H P   L+D   L TL   Q   G AE+IK     HL  F+ L E            + D     K    EI        + +   +  E+G   ++  GHT+  + E  L   + L HG AIS+ M  +  L++  G LS  +  ++  L  +A L
Sbjct:   70 GEKYKTLDTLNCIFNALLKNRFDRSCTLIALGGGVVGDMTGFAAASYQRGVNFIQIPTTLLSQVDSSVGGKTGINHVLGKNMIGIFHQPKCVLIDIDTLDTLNNQQYSAGMAEVIKYGLLGHLNFFNFLQE-----------NIRDLMDRNKPLMAEIIYQSCQYKINIVVQDELEVGKRALLNLGHTFGHVIENILGYGIFL-HGEAISVGMLMAVKLSHLEGYLSINQVAQVQDLLEKANL 300          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CAMJR (3-dehydroquinate synthase OS=Campylobacter jejuni (strain RM1221) GN=aroB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 77/279 (27.60%), Postives = 136/279 (48.75%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLET----PNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL-----FYEE-ILDKATQS 813
            E+ I     GE+ K+L T   I++ M +  + RK           +D+ GFA + Y+R  ++I IPTT++  +DA V  K  VN    KN +G ++ P     +  FL+TL   ++  G AE IK+   A +  + +LD F E++ +  F   +          +EI    I + ++L++     +  E  L  ++ YGHT++ + E      L  HG A++I M  +  LA + GLL   + +R+  +  + GL + +++     FYE   +DK + +
Sbjct:   52 EIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGFAASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLKTLSSRELAAGMAEFIKM---AAMFDYSILD-FIEKIDEKSFLNAT--------CENEIFTQIIAKSIELKSRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGLLDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSN 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CAMJE (3-dehydroquinate synthase OS=Campylobacter jejuni GN=aroB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 77/279 (27.60%), Postives = 136/279 (48.75%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLET----PNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL-----FYEE-ILDKATQS 813
            E+ I     GE+ K+L T   I++ M +  + RK           +D+ GFA + Y+R  ++I IPTT++  +DA V  K  VN    KN +G ++ P     +  FL+TL   ++  G AE IK+   A +  + +LD F E++ +  F   +          +EI    I + ++L++     +  E  L  ++ YGHT++ + E      L  HG A++I M  +  LA + GLL   + +R+  +  + GL + +++     FYE   +DK + +
Sbjct:   52 EIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGFAASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLKTLSSRELAAGMAEFIKM---AAMFDYSILD-FIEKIDEKSFLNAT--------CENEIFTQIIAKSIELKSRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGLLDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSN 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_WOLSU (3-dehydroquinate synthase OS=Wolinella succinogenes GN=aroB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 83/280 (29.64%), Postives = 133/280 (47.50%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLE----TPNLHEIGLDRVIAYGHTWSPL--HELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSM-----DHELFYE-EILDKATQS 813
            E+ +  T  GE  K+L++   I++S  +  + RK            D+ GFA   ++R   +++IPTT++  +DA V  K  VN    KN +G +H P    +D  FL++LP  +   G AE++K++      TFD   EF E L +   G + DH   +K         GI   +K++      +  E G+   + YGHT+  +  HE      L HG A+ + M  + TLA   GLL + E  R+  L +R  +       D E FY+   LDK +++
Sbjct:   53 EVFVCTTPDGEAYKTLESVEMILESAFNHRLDRKSLMIALGGGVIGDMVGFASGIFQRGIGFVQIPTTLLSQVDASVGGKTGVNNAFGKNLIGLFHQPKAVYIDPLFLKSLPPREFGAGVAEMVKMA-----VTFD--REFFEELER---GDLRDHSFLLK---------GIERCVKIKARVVAMDEREQGIRAALNYGHTFGHVIEHESGYGHYL-HGEAVGMGMVMANTLACGLGLLKESEAERIEKLLARYEIPTRYAIGDVERFYDLFFLDKKSEN 312          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_UNCTG (3-dehydroquinate synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=aroB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 67/244 (27.46%), Postives = 111/244 (45.49%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSM 765
            GE  K++ + + + D   + GI RK            DVAGF  A Y R  NYI++PTT++ + D+ V  K AVN    KN  G ++ P    ++  FL TL E  ++NG AE+IK +       +  L +  E       G V   D E       I ++  ++   +E       GL  V+ +GHT++   E A       HG A+++ M ++  L+    +   E ++ +  L  +A  ++
Sbjct:   72 GEIGKNIKSLSFLYDKALEAGIDRKSCAIALGGGVIGDVAGFFAATYMRGINYIQVPTTLLAMTDSSVGGKTAVNIKGGKNIAGVFYQPDLVWINSAFLSTLTERHIKNGLAEIIKYAFTFDKKFYSYLSDTLEN------GTVPPKDFEY-----IIYQSCSYKARVVEKDEKEITGLRAVLNFGHTFAHALETATKYKKFLHGEAVAVGMLFAVKLSLKLRICKPETYKEVENLLQKADFTL 304          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROMH (3-dehydroquinate synthase OS=Proteus mirabilis (strain HI4320) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 69/251 (27.49%), Postives = 117/251 (46.61%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL    ++  ++ +    R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L TLP  ++ +G AE+IK         F  L+   ++LI  +         R  +   ++  AADE   +G+  +L L     H I  +  + YG  W             HG A++  M  +A  A D G  +  E +R++ L  +A L ++
Sbjct:   72 GEQYKSLTVMNDVFTALLEKNHNRDTTLLALGGGVIGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVIDLDCLATLPPRELSSGLAEVIKYGIILDKDFFIWLENNIDKLIALEPKAMAYCIRRCCELKAQV-VAADEKETSGLRALLNLGHTYGHAI--EAHMGYG-VW------------LHGEAVAAGMVMAAKTAQDLGQFTQAETQRVIQLLKKANLPVN 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROMA (3-dehydroquinate synthase OS=Prochlorococcus marinus GN=aroB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 68/243 (27.98%), Postives = 118/243 (48.56%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD-EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K+ ++   I ++  +  + R             D+AGFA A + R  +++++PTT++ ++DA V  K  VN+   KN +GA+H P   L+D   L+TLP+ + R+G AE+IK      L  F+ L+   E  +   +         IK+    E+ +  +    ++   +  E GL  ++ YGHT+  + E L       HG A+S+ M     LA  + L + ++  R   L ++AGL
Sbjct:   79 GENKKNYESIALIHNAAYEHQLDRGSLIIALGGGVIGDMAGFAAATWLRGIDFVQVPTTLLAMVDASVGGKTGVNHPKGKNLIGAFHQPKLVLIDINTLKTLPQREFRSGMAEIIKYGVIKDLELFNKLEN--EEDLSNIYS--------IKECVLLELIKISVSIKARIVEKDEKESGLRAILNYGHTFGHVIETLCGYGHWLHGEAVSMGMVLIGQLALRKNLWNVDDALRQEKLLTKAGL 311          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_METCA (3-dehydroquinate synthase OS=Methylococcus capsulatus GN=aroB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 73/259 (28.19%), Postives = 116/259 (44.79%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL------SMDHELFYEEI 792
            GE  K+LD+   + D++      R             D+AGFA A Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ P   L D   L TLP+ ++  G AE+IK            L+   ERL++         D E    A E          ++   +  E G+   +  GHT+    E      +  HG A++I M  +A L+   G + D+E  R++ L  RA L       +D + F E +
Sbjct:   70 GEAHKTLDSAMAVFDALLARRFGRNAAIVALGGGVIGDLAGFAAACYQRGVPFIQVPTTLLSQVDSSVGGKTAVNHPRGKNMIGAFYQPRCVLADTDTLDTLPDRELSAGLAEVIKYGFIRDPEFLAWLEANVERLLQ--------RDPEALAYAIE---RSCINKAEIVAEDETETGVRATLNLGHTFGHAIETGMGYGVCLHGEAVAIGMCQAADLSRRLGWIGDDEVARVIRLLERARLPVVPPRELDADAFLEHM 317          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CYAA5 (3-dehydroquinate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 68/262 (25.95%), Postives = 120/262 (45.80%), Query Frame = 1
Query:   22 HQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLS--MDHELFYEEILD 798
            H    GE  K+LD+ + I D+     + R             D+ GFA A + R  N+I++PT+++ ++DA +  K  VN+   KN +GA++ P   L+D   L+TLP  + R G AE+IK     +   F+ L+         +  ++   D    +    I        + + + +  E GL  ++ YGHT    L  L     + HG A+++ M  +  +A   G+  +E  +R   +  +A L   +D+ L  + IL+
Sbjct:   69 HVIPAGETYKTLDSISKIYDTALKHRLERASTLLALGGGVIGDMTGFAAATWLRGINFIQVPTSLLAMVDASIGGKTGVNHPQGKNLIGAFYQPRLVLIDPIVLKTLPVREFRAGMAEVIKYGVIWNQGLFNQLE---------RQKKLDSLDSINLETIQTIITQSCQAKVDVVSQDEKEAGLRAILNYGHTIGHALESLTGYREINHGEAVALGMVAAGKIAVKLGMWKEEMSQRQKNIIQKAALPVIVDYPLKSQAILE 321          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_STRP19.397e-1927.763-dehydroquinate synthase OS=Streptococcus pyogene... [more]
AROB_RUTMC9.397e-1929.633-dehydroquinate synthase OS=Ruthia magnifica subs... [more]
AROB_CAMJR9.397e-1927.603-dehydroquinate synthase OS=Campylobacter jejuni ... [more]
AROB_CAMJE9.397e-1927.603-dehydroquinate synthase OS=Campylobacter jejuni ... [more]
AROB_WOLSU1.227e-1829.643-dehydroquinate synthase OS=Wolinella succinogene... [more]
AROB_UNCTG1.227e-1827.463-dehydroquinate synthase OS=Uncultured termite gr... [more]
AROB_PROMH1.227e-1827.493-dehydroquinate synthase OS=Proteus mirabilis (st... [more]
AROB_PROMA1.227e-1827.983-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_METCA1.227e-1828.193-dehydroquinate synthase OS=Methylococcus capsula... [more]
AROB_CYAA51.227e-1825.953-dehydroquinate synthase OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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