FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_LEUMM (3-dehydroquinate synthase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 65/241 (26.97%), Postives = 109/241 (45.23%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE +KSL     ++  M   G  R +           D+ G   + Y R   +I+I T++   +D+ V  K AVN GN KN  G+++ P   L+D  +L TL +  +  G+AE++K S+ A+   FD   +     IK+          +I+  A E+++  I     +   +  E G  + + +GHT+    EL     LRHG A++I M   ++     G++       LL+     GL
Sbjct:   73 GESSKSLSVAGELIAKMAAAGFTRGDGVIALGGGVIGDLGGVVASLYMRGIAFIQIATSLTAQVDSSVGGKTAVNLGNTKNIAGSFYQPDLDLVDVTYLNTLTDRDLVEGYAEVVKTSALANQDFFDFTGQ-----IKSV--------ADIRHHAQELSKRAIAYKASVVMADEKEAGDRQFLNFGHTFGHAIELLAHGELRHGEAVAIGMIAISSRFEQHGIMPRGLTTELLSRLEAVGL 300          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ENT38 (3-dehydroquinate synthase OS=Enterobacter sp. (strain 638) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 69/244 (28.28%), Postives = 112/244 (45.90%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I+IPTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L TLP+ ++ +G AE+IK         F  L++  + L+          DG   KA     R       ++   +  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G    EE +R++ L  RAGL
Sbjct:   72 GEQYKSLAVLETVFTALLQKPHGRDTTLLALGGGVVGDLTGFAAASYQRGVRFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLNTLPQRELASGLAEVIKYGIILDGEFFSWLEDNMDALLNL--------DG---KALAYCIRRCCELKAEVVAADERETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFKQEETQRIITLLERAGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOUT (3-dehydroquinate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOSM (3-dehydroquinate synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOLU (3-dehydroquinate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOLC (3-dehydroquinate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOL6 (3-dehydroquinate synthase OS=Escherichia coli O6 GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOK1 (3-dehydroquinate synthase OS=Escherichia coli O1:K1 / APEC GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECOHS (3-dehydroquinate synthase OS=Escherichia coli O9:H4 (strain HS) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECO7I (3-dehydroquinate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_LEUMM2.094e-1826.973-dehydroquinate synthase OS=Leuconostoc mesentero... [more]
AROB_ENT382.094e-1828.283-dehydroquinate synthase OS=Enterobacter sp. (str... [more]
AROB_ECOUT2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOSM2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOLU2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O17:... [more]
AROB_ECOLC2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOL62.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O6 G... [more]
AROB_ECOK12.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O1:K... [more]
AROB_ECOHS2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O9:H... [more]
AROB_ECO7I2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O7:K... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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