FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECO5E (3-dehydroquinate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGTFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECO57 (3-dehydroquinate synthase OS=Escherichia coli O157:H7 GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGTFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECO45 (3-dehydroquinate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ECO27 (3-dehydroquinate synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 70/254 (27.56%), Postives = 117/254 (46.06%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK-------FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ KSL     +  ++      R             D+ GFA A+Y+R   +I++PTT++  +D+ V  K AVN+   KN +GA++ PA  ++D   L+TLP  ++ +G AE+IK         F+ L+E  + L++           R  +   E+  AADE                  E GL  ++  GHT+   H +   +      HG A++  M  +A  +   G  S  E +R++ L +RAGL ++
Sbjct:   72 GEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEV-VAADE-----------------RETGLRALLNLGHTFG--HAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLTRAGLPVN 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CLOPS (3-dehydroquinate synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 65/254 (25.59%), Postives = 118/254 (46.46%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            E+++     GEK+KS      I + + DF + R +           D+AGF  + + R  ++I+IPT+++  +D+ V  KVAV+    KN +G+++ P   L+D   L TLPE    +G  E+IK         F+ L+ F  +        + ++ GEI      I R       +L   +  ++G   ++ +GHT    + ++       HG A++I M   + +A ++ L       R+ +L  + GL+ D
Sbjct:   64 EVEVISVTPGEKSKSFSILPGIYNKLLDFKLTRSDLIIALGGGVVGDLAGFVASTFLRGISFIQIPTSLLAQVDSSVGGKVAVDLERGKNLVGSFYHPQLVLIDPNMLGTLPEKYFNDGLGEVIKYGCIKSKELFEKLEGFKNK------EDLKENIGEIIYECCNIKR-------ELVENDEKDLGERMILNFGHTLGHAIEQIYNYETYSHGEAVAIGMNMISKIAEEKDLTKKGTAERIESLLKKYGLNTD 304          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CLOP1 (3-dehydroquinate synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 64/255 (25.10%), Postives = 116/255 (45.49%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL-IKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            E+++     GEK+KS      I + + DF + R +           D+AGF  + + R  ++I+IPT+++  +D+ V  KVAV+    KN +G+++ P   L+D   L TLPE    +G  E+IK         F+ L+ F  +  +K   G +      IK+   E +                ++G   ++ +GHT    + ++       HG A++I M   + +A ++ L       R+ +L  + GL+ D
Sbjct:   64 EVEVISVTPGEKSKSFSVLPGIYNKLLDFKLTRSDLIIALGGGVVGDLAGFVASTFLRGISFIQIPTSLLAQVDSSVGGKVAVDLERGKNLVGSFYHPELVLIDPNMLGTLPEKYFNDGLGEVIKYGCIKSKELFEKLEGFENKEDLKENIGEIIYECCNIKREVVENDEK--------------DLGERMILNFGHTLGHAIEQIYNYETYSHGEAVAIGMNMISKIAEEKDLTKKGTAERIESLLKKYGLNTD 304          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BUCAP (3-dehydroquinate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 69/256 (26.95%), Postives = 123/256 (48.05%), Query Frame = 1
Query:   13 LKIHQTMI--GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNL----HEIGLDRVIAYGHTWSPLHEL-APPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            +KI Q ++  GE+ K+L+    I+ ++ +    R             D+ GF+ + Y+R   +I+IPTT++  +DA V  K  VN+   KN +G++  P+  ++D  FL+TLP  ++ +G AE+IK +       F+ L+E  E L+                  DE+    I +  +L+   +     E     ++ +GHT+    E  A      HG AIS+ M  ++  +   G L   +++R+L+L  +AGL
Sbjct:   62 IKIDQVILSDGEQFKTLNEMEVIISALLEKKHSRDTTLIALGGGVIGDLTGFSASIYQRGVRFIQIPTTLLSQVDASVGGKTGVNHLLGKNMVGSFWQPSSVIIDINFLKTLPYNELVSGMAEVIKYAVIFDANFFEWLEENIENLLLLN---------------DELMSYCIKKCCELKAQIIALDERENNFRALLNFGHTYGHAIEAHAGYGSWLHGEAISVGMVMASRTSELIGCLKKTDYKRILSLLKKAGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ANASP (3-dehydroquinate synthase OS=Anabaena sp. (strain PCC 7120) GN=aroB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 67/246 (27.24%), Postives = 117/246 (47.56%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKA----ADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L++   + D   +  + R             D+ GFA A + R  N +++PTT++ ++D+ +  K  VN+ + KN +GA+H P   L+D   L+TLP  + R G AE+IK         F+ L++  +RL + ++ +    D  + ++    AD + ++              E GL  ++ YGHT    +  L     L+HG A+ I M  +  +A +  L    +  R  AL  +AGL
Sbjct:   74 GERYKTLNSIQKLYDIALENRLERSSTMVALGGGVIGDMTGFAAATWLRGINVVQVPTTLLAMVDSAIGGKTGVNHPHGKNLIGAFHQPRFVLIDPQVLKTLPVREFRAGMAEVIKYGVIWDAELFNQLEQ-SKRLDQLRYIKPELVDAILTRSCQAKADVVGKDE------------KEGGLRAILNYGHTVGHAVESLTNYRLLKHGEAVGIGMVAAGQIAVNLELWQQADADRQNALIEKAGL 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_XANOR (3-dehydroquinate synthase OS=Xanthomonas oryzae pv. oryzae GN=aroB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 78/265 (29.43%), Postives = 126/265 (47.55%), Query Frame = 1
Query:    4 RLELKIHQTMI--GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSC--------AHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            R +L+I + +I  GE +K+LDTF + + ++ + G  R             D+AGFA A + R  + +++PT+++ ++D+ V  K AV+    KN +GA+H P   L D   LRTLP  ++R G AE+IK  +          H     LLD     L +    R  +H  EI  A D + + G   +L L     H I  ++   YG   +P ++      L HG A+++ M  +A L+   G+   ++   L AL     L  D
Sbjct:   66 RPDLQIGELVIAAGEASKTLDTFGSAITALAELGATRDACVFALGGGVVGDLAGFAAACWMRGVDCVQLPTSLLAMVDSSVGGKTAVDIPQGKNLVGAFHPPRAVLADTDTLRTLPARELRAGLAEVIKYGAIRDPLFFQWLHAERHALLDSDPAALAQA-IARSCEHKAEI-VARDPLEK-GERALLNLGHTFGHAIETEQ--GYG---APGND-----NLNHGEAVAVGMVLAARLSATLGMSDAQDTEALRALLHDFELPTD 317          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_XANOP (3-dehydroquinate synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=aroB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 78/265 (29.43%), Postives = 126/265 (47.55%), Query Frame = 1
Query:    4 RLELKIHQTMI--GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSC--------AHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            R +L+I + +I  GE +K+LDTF + + ++ + G  R             D+AGFA A + R  + +++PT+++ ++D+ V  K AV+    KN +GA+H P   L D   LRTLP  ++R G AE+IK  +          H     LLD     L +    R  +H  EI  A D + + G   +L L     H I  ++   YG   +P ++      L HG A+++ M  +A L+   G+   ++   L AL     L  D
Sbjct:   66 RPDLQIGELVIAAGEASKTLDTFGSAITALAELGATRDACVFALGGGVVGDLAGFAAACWMRGVDCVQLPTSLLAMVDSSVGGKTAVDIPQGKNLVGAFHPPRAVLADTDTLRTLPARELRAGLAEVIKYGAIRDPLFFQWLHAERHALLDSDPAALAQA-IARSCEHKAEI-VARDPLEK-GERALLNLGHTFGHAIETEQ--GYG---APGND-----NLNHGEAVAVGMVLAARLSATLGMSDAQDTEALRALLHDFELPTD 317          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_ECO5E2.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O157... [more]
AROB_ECO572.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O157... [more]
AROB_ECO452.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O45:... [more]
AROB_ECO272.094e-1827.563-dehydroquinate synthase OS=Escherichia coli O127... [more]
AROB_CLOPS2.094e-1825.593-dehydroquinate synthase OS=Clostridium perfringe... [more]
AROB_CLOP12.094e-1825.103-dehydroquinate synthase OS=Clostridium perfringe... [more]
AROB_BUCAP2.094e-1826.953-dehydroquinate synthase OS=Buchnera aphidicola s... [more]
AROB_ANASP2.094e-1827.243-dehydroquinate synthase OS=Anabaena sp. (strain ... [more]
AROB_XANOR2.734e-1829.433-dehydroquinate synthase OS=Xanthomonas oryzae pv... [more]
AROB_XANOP2.734e-1829.433-dehydroquinate synthase OS=Xanthomonas oryzae pv... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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