FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7224 contig Ccv1_Contig7224:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ARTS2 (3-dehydroquinate synthase OS=Arthrobacter sp. (strain FB24) GN=aroB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 67/209 (32.06%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  145 TDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDH 771
            TD+AGF  A + R    I +PT+++G++DA V  K  +N    KN +GA+H PA  L D   L TLP+ ++ +G AE+IK   C  +    +LD     L++     V+D      +   E+    I     + + +L E G   ++ YGHT     EL      RHG A+S+ M ++A LA   G LSD +  R   +    GL + +
Sbjct:  112 TDLAGFVAATWLRGVKVIHMPTSLLGMVDASVGGKTGINTAEGKNLVGAFHPPAAVLADLDTLSTLPKNELISGMAEVIK---CGFIADPAILD-----LVEKDPSAVTDPQSAFLR---ELIERAIAVKADVVSEDLKETGRREILNYGHTLGHAIELVERYSWRHGAAVSVGMMFAAELARSVGRLSDADADRHRTILETLGLPITY 309          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_GEOUR (3-dehydroquinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=aroB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 72/245 (29.39%), Postives = 117/245 (47.76%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ K+ DT  +I D + DFG+ R             D+AG+A A Y R   ++++PTT++  +D+ V  K  +N+   KN +GA++ P   ++D   L TL E +  +G AE+ K         F  + +  E+L+          D E   AA  + R+   +   +E     E GL  V+ YGHT    +  L       HG A++I MA +A ++   G  S ++  R+L+L S+  L  D
Sbjct:   73 GEEYKNSDTLKDIYDWLIDFGLDRGSFIVALGGGVIGDMAGYAAATYLRGIPFVQVPTTLLAQVDSSVGGKTGINHEKGKNLIGAFYQPRLVMIDVAVLDTLAEREYLSGLAEMAKYGVVLDAEFFRFMYDNVEKLL--------SRDKECLLAA--VKRSCALKASVVEQDE-REGGLRAVLNYGHTIGHAVETLTGYRQYLHGEAVAIGMAQAAKISESMGFSSSDDTERVLSLLSKLKLPQD 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CORJK (3-dehydroquinate synthase OS=Corynebacterium jeikeium (strain K411) GN=aroB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 68/251 (27.09%), Postives = 112/251 (44.62%), Query Frame = 1
Query:   22 HQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HQ    E AK+  +     D     G+ R +          TD+AGF  A + R    +  PTT++ ++DA V  K  +N    KN +G++H P+  ++D   L TLPEA++  G AE++K    A      + +   +  +        D  G +     E+    I     +   +L E  L  ++ YGHT+    E       RHG A+++ M + A LA   GLLS+ + RR   + +  GL+  ++
Sbjct:   76 HQIDDAESAKTAQSAAECWDVCAQVGLTRADTIIGLGGGAATDLAGFIAATWMRGIKVVHYPTTLLAMVDAAVGGKTGINTPAGKNLVGSFHEPSAVIVDLEVLETLPEAEMIAGSAEIVKAGFIADTEILGIYEADPQAAL--------DPHGSL----PELIARAIQVKADVVAVDLKESSLREILNYGHTYGHAVEHYEDYRWRHGQAVAVGMIFEAELAKAAGLLSEADVRRHRDILNSVGLATSYD 314          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_THISH (3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-21
Identity = 68/245 (27.76%), Postives = 120/245 (48.98%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE+ K+++T   +  ++ +    RK            D+ GFA A+Y+R  ++I++PTT++  +D+ V  K  VN+   KN +GA+H P   ++D   L TLP+ ++R G AE+IK       P FD L+   +RL+            + +  A  I+R+   +  ++   +  E G   ++  GHT+    E      +  HG  ++  M  +A ++   G L  E+  R  AL +RAGL ++
Sbjct:   70 GEEYKTMETLNQVYTALLEARFDRKATLVALGGGVIGDITGFAAASYQRGVDFIQVPTTLLSQVDSSVGGKTGVNHPLGKNMIGAFHQPRCVVIDTDTLDTLPDRELRAGIAEVIKYGLICDRPFFDWLEANMDRLLAR----------DPEALAYAIHRS-CHDKAQVVAEDEREGGRRAILNLGHTFGHAIETGMGYGVWLHGEGVATGMVMAARMSRRLGWLDAEDLHRTEALIARAGLPVE 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_VIBFM (3-dehydroquinate synthase OS=Vibrio fischeri (strain MJ11) GN=aroB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 73/248 (29.44%), Postives = 118/248 (47.58%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD--EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSM 765
            GE+ K+LDTF  I+  + +    R             DV GFA A Y+R  ++I+IPTT++  +D+ V  K A+N+   KN +GA++ P   ++D   L+TLPE +   G AE+IK         FD LDE  ++L         DHD  I   +   +I  + + +  K       E G+  ++  GHT+   H +   +      HG A+S     +A  A   GL+S  +  R+ ++  +A L +
Sbjct:   73 GEQYKNLDTFNQILTFLLEENHSRDVTIVALGGGVVGDVVGFASACYQRGVDFIQIPTTLLSQVDSSVGGKTAINHPLGKNMVGAFYQPKAVIIDINCLKTLPEREFAAGMAEVIKYGIIVDREFFDWLDENMDKLY------ALDHDALIYAISRCCQIKADVVAKDEK-------ESGMRALLNLGHTFG--HAIEAEMGYGNWLHGEAVSAGTVMAAVTAQKEGLISQSDVERICSILEKAKLPL 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_VIBF1 (3-dehydroquinate synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=aroB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 73/248 (29.44%), Postives = 118/248 (47.58%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD--EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSM 765
            GE+ K+LDTF  I+  + +    R             DV GFA A Y+R  ++I+IPTT++  +D+ V  K A+N+   KN +GA++ P   ++D   L+TLPE +   G AE+IK         FD LDE  ++L         DHD  I   +   +I  + + +  K       E G+  ++  GHT+   H +   +      HG A+S     +A  A   GL+S  +  R+ ++  +A L +
Sbjct:   73 GEQYKNLDTFNQILTFLLEENHSRDVTIVALGGGVVGDVVGFASACYQRGVDFIQIPTTLLSQVDSSVGGKTAINHPLGKNMVGAFYQPKAVIIDINCLKTLPEREFAAGMAEVIKYGIIVDREFFDWLDENMDKLY------ALDHDALIYAISRCCQIKADVVAKDEK-------ESGMRALLNLGHTFG--HAIEAEMGYGNWLHGEAVSAGTVMAAVTAQKEGLISQSDVERICSILEKAKLPL 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CAMLR (3-dehydroquinate synthase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=aroB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 87/291 (29.90%), Postives = 136/291 (46.74%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFD-LLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL------SMDHELFYEEILDKATQSF*DPRRALACSCAKS 858
            EL I +   GE+ K+L T   I++ M  + + RK           +D+ GF  + Y+R   +I IPTT++  +DA V  K  VN    KN +G ++ P     +  FL+TLP  ++  G AE IK++       FD  +  F E L + KF      D  +     +I +  I     + + +  E GL  ++ YGHT++ + E         HG A++I M  +  LA + GLLS++E +R+  L ++  L      S  HE +    LDK T  F      LAC   K+
Sbjct:   53 ELFIIKIKDGEEYKNLQTIEYILNQMCAYKLDRKSLLISFGGGVISDMGGFVASIYQRGIEFINIPTTLLACVDASVGGKTGVNNKFGKNLIGTFYQPKAVYCESRFLKTLPSRELAAGMAEFIKMA-----VVFDETILSFLENLNEDKFLNAKLDDITLA----QIIQKSIELKASVVSQDEKESGLRMLLNYGHTFAHVIENQTGYKKYLHGEAVAIGMNMANVLALNLGLLSEQECQRVQNLLAKFKLPISYKISNTHEFYNAFFLDKKTH-FQKINFILACGLGKA 333          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_NITSB (3-dehydroquinate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=aroB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 82/275 (29.82%), Postives = 130/275 (47.27%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP-LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSM-----DHELFYEE-ILDKATQS 813
            EL I     GE  K+ +T   ++D + D  + RK            D+ GFA + ++R  ++I+IPTT++  +DA V  K  +N    KN +GA+H P    +D  FL+TLP+ +   G AE++K++       FD   +F E L+K       +    IK++ +            +   +  E G+   + YGHT++ + E         HG A++I M  +  LA   GLLS E+  ++  L  R  L +     D E FYE   LDK TQ+
Sbjct:   55 ELYIITLPDGEDYKNQETLDFLLDRLFDHKLDRKSVLIAFGGGVIGDMTGFAASVFQRGIDFIQIPTTLLSQVDASVGGKTGINNRFGKNLIGAFHQPKAVYIDTHFLQTLPQREFSAGVAEIVKMA-----VVFD--KDFFEWLMKNDLKEEDNLKYAIKRSVE--------LKAAIVAKDEREGGVRASLNYGHTFAHVIENETGYKRFLHGEAVAIGMVMANELAVKTGLLSREDAEKIKNLLQRYNLPVCYEVEDPEDFYEHFFLDKKTQN 314          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_GEOSL (3-dehydroquinate synthase OS=Geobacter sulfurreducens GN=aroB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.451e-21
Identity = 76/258 (29.46%), Postives = 118/258 (45.74%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELF----YEEIL 795
            GE+ K+  T T++ D +   G+ R             D+AG+A A Y R   ++++PTT++  +D+ V  K  +N+   KN +GA+H P   L+D   L TLP+ +   G AE+IK         F     F E+ +    GR      + +     I R    +   +E     E GL  V+ YGHT+   +  L     + HG A++I M  +A LA  RG  S  + RR+ AL    GL  +   F    Y ++L
Sbjct:   75 GEEHKTSVTLTSVYDELIKGGLTRDSLLVALGGGVVGDLAGYAAATYLRGVPFVQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFHQPRAVLIDVDTLATLPQREYLGGLAEVIKYGVVLDGKFF----AFLEQNVSALLGR------DRQTLVRAITRCCALKAWVVEQDE-RETGLRAVLNYGHTFGHAVEALTGYTAVLHGEAVAIGMVRAAVLAEARGHSSAGDTRRIRALVEALGLPTELPSFDADSYRDVL 321          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CYAP7 (3-dehydroquinate synthase OS=Cyanothece sp. (strain PCC 7424) GN=aroB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.451e-21
Identity = 73/251 (29.08%), Postives = 116/251 (46.22%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            E+  H    GE  K+LD+ T I D+  +  + R             D+ GFA A + R  +++++PT+++ +IDA +  K  VN+   KN +GA+H P   L+D   L+TLP  + R G AE+IK         F  L+         K    SD D ++ +    I          + + +  E GL  ++ YGHT    +  L     + HG  ++I M  + T+A    L S++E  R  AL  +AGL
Sbjct:   65 EVATHLIPEGEIYKTLDSITQIYDTAVENFLERSSTMIALGGGVVGDMTGFAAATWLRGISFVQVPTSLLAMIDAAIGGKTGVNHPKGKNLIGAFHQPRLVLIDPQVLKTLPPREFRAGMAEVIKYGVIWDANLFSQLE------AAKKLDEFSDLDEDLLQT---IITRSCQAKADVVSKDEKEAGLRAILNYGHTIGHGIESLTGYSQIIHGEGVAIGMVAAGTIAVKLQLWSEQEANRQDALIKKAGL 306          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_ARTS29.081e-2232.063-dehydroquinate synthase OS=Arthrobacter sp. (str... [more]
AROB_GEOUR1.186e-2129.393-dehydroquinate synthase OS=Geobacter uraniireduc... [more]
AROB_CORJK1.186e-2127.093-dehydroquinate synthase OS=Corynebacterium jeike... [more]
AROB_THISH1.549e-2127.763-dehydroquinate synthase OS=Thioalkalivibrio sp. ... [more]
AROB_VIBFM2.023e-2129.443-dehydroquinate synthase OS=Vibrio fischeri (stra... [more]
AROB_VIBF12.023e-2129.443-dehydroquinate synthase OS=Vibrio fischeri (stra... [more]
AROB_CAMLR2.023e-2129.903-dehydroquinate synthase OS=Campylobacter lari (s... [more]
AROB_NITSB2.642e-2129.823-dehydroquinate synthase OS=Nitratiruptor sp. (st... [more]
AROB_GEOSL3.451e-2129.463-dehydroquinate synthase OS=Geobacter sulfurreduc... [more]
AROB_CYAP73.451e-2129.083-dehydroquinate synthase OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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