FC877951

Overview
NameFC877951
Unique NameFC877951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_ASHGO (Mitochondrial intermediate peptidase OS=Ashbya gossypii GN=OCT1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  129 HFYTRTSNGVP----TGLYGFDHLKSPNGFQRFVDDALERSSELVNYISEMPSSVEIIR---AMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYL---LPKEAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQN 632
            +F++R+    P    TGL+   +L SP G ++F + +L  ++ LV  + E  S   ++R    +D++SD +C V+D  E  R  HPD +FV  A +   ++ E ++ LNT+  L   +K+   D  +   L  E  R  + L  DFEK G +   +   +  QL+ +I  + ++F  N
Sbjct:   71 YFWSRSKATAPQVAHTGLFQNPYLNSPEGLRKFANKSLTEATALVRNLREDSSQEGLVRYIIRLDQLSDILCRVIDLCEFLRAAHPDEQFVAAAQECHEQMFEIMNILNTDVVLCKRLKQVLSDENISSKLSSEEIRVGHILLEDFEKAGAYASPEVRKQFIQLSQNISIIGQDFINN 248          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_YARLI (Mitochondrial intermediate peptidase OS=Yarrowia lipolytica GN=OCT1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 49/170 (28.82%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  135 YTRTSNGVPTGLYGFDHLKSPNGFQRFVDDALERSSELVNYI----SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYLLPKEAHR---AANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREF 623
            Y    +   TGL+  D LK+P GFQ++   ++E + +L+  +    ++       I   D +SD +C V+D AE  R  HP++ FV+ A +A  ++ EY++ LNT+  LY  +     D  ++ +  H        L  DF+K G+ L     +    L   I  L R+F
Sbjct:   80 YLTNESDYETGLFMNDFLKTPAGFQKYTAASIEEAGQLIQQLLGALTQRDKLRHAITTFDRLSDVLCQVIDLAEFIRAAHPEQHFVQAAQEAHEQMYEYMNVLNTSVELYTVLDMVFKDSEIVNQLTHEEKVVGTLLLEDFKKSGVTLDDAGRENFVSLTTKISLLGRDF 249          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_NEUCR (Mitochondrial intermediate peptidase OS=Neurospora crassa GN=oct-1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 58/186 (31.18%), Postives = 93/186 (50.00%), Query Frame = 3
Query:   96 KSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDALERSSELVNYISEMPSSVE---IIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYL---LPKEAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNI 635
            +S +    T + F +   +G   GL+   +L SP+GF  F   +L ++  LV+ +    S  E   I+R +D +SD +C V+D A+  R THPD++    AS A   + EY++ LNT   LYD + +A  +  +     +E    A  L+ DF K  +HL  D  D+   L+  I Q    F Q++
Sbjct:   68 RSIFDSPETWKQF-SGDKHGRNVGLFRNAYLTSPHGFLDFAHVSLGKARALVDKVLNAQSLDEYRAIVRHLDRLSDILCRVLDMADFVRVTHPDQQIQRTASMAWDMMYEYMNQLNTMTGLYDQLVQAMDNPQVSTTWSEEERMVAEVLKLDFAKSAVHLPKDARDKFVHLSSAISQTGTNFIQHM 252          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_NEOFI (Mitochondrial intermediate peptidase OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=oct1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 54/180 (30.00%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  141 RTSNGVPTGLYGFDHLKSPNGFQRFVDDALERSSELVNYI---SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYLLPK---EAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDI 662
            R++   PTGL    +L SP+GF+ F + +L++   +V+ +   S +     + R +D +SD +C V+D ++  R  HPD +  E A++A   + EY++ LNT   L D +KKA  +  +  +   E    A  L  DF    IH+   +  R   L+ DI QL   F         HV +
Sbjct:   81 RSAQPKPTGLVQNQYLTSPDGFRTFANVSLQKCQAIVSKVLAASTLEEYRTMARDLDRLSDLLCRVIDLSDFIRVIHPDPQVQEAATQAYALMFEYMNVLNTTTGLNDQLKKAAANPEVTSQWSDEEKIVAQILIKDFSNSAIHMPPHERQRFVNLSNDISQLGSSFVNGAEPAKSHVSV 260          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_YEAST (Mitochondrial intermediate peptidase OS=Saccharomyces cerevisiae GN=OCT1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   66 IRRTAPFVGCKSCYSDHSTTRHFYTRTSNGVP----------TGLYGFDHLKSPNGFQRFVDDALERSSELV----NYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKA----ELDGYLLPKEAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREF 623
            + RT+P    K  + D+S  R+   + +N             TGL+   +L SP+G ++F   +L+++ EL+    N  SE    +  I  +D +SD +C V+D  E  R THPD  FV  A     ++ E+++ LNT+ +L + +K      E+   L  +E  +    L  DFEK GI++  D  ++  QL+ +I  + +EF
Sbjct:   34 VSRTSPG-SIKKIFDDNSYWRNINGQDANNSKISQYLFKKNKTGLFKNPYLTSPDGLRKFSQVSLQQAQELLDKMRNDFSES-GKLTYIMNLDRLSDTLCRVIDLCEFIRSTHPDDAFVRAAQDCHEQMFEFMNVLNTDVSLCNILKSVLNNPEVSSKLSAEEL-KVGKILLDDFEKSGIYMNPDVREKFIQLSQEISLVGQEF 234          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_YEAS7 (Mitochondrial intermediate peptidase OS=Saccharomyces cerevisiae (strain YJM789) GN=OCT1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   66 IRRTAPFVGCKSCYSDHSTTRHFYTRTSNGVP----------TGLYGFDHLKSPNGFQRFVDDALERSSELV----NYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKA----ELDGYLLPKEAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREF 623
            + RT+P    K  + D+S  R+   + +N             TGL+   +L SP+G ++F   +L+++ EL+    N  SE    +  I  +D +SD +C V+D  E  R THPD  FV  A     ++ E+++ LNT+ +L + +K      E+   L  +E  +    L  DFEK GI++  D  ++  QL+ +I  + +EF
Sbjct:   34 VSRTSPG-SIKKIFDDNSYWRNINGQDANNSKISQYLFKKNKTGLFKNPYLTSPDGLRKFSQVSLQQAQELLDKMRNDFSES-GKLTYIMNLDRLSDTLCRVIDLCEFIRSTHPDDAFVRAAQDCHEQMFEFMNVLNTDVSLCNMLKSVLNNPEVSSKLSAEEL-KVGKILLDDFEKSGIYMNPDVREKFIQLSQEISLVGQEF 234          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_PICST (Mitochondrial intermediate peptidase OS=Pichia stipitis GN=OCT1 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 49/168 (29.17%), Postives = 84/168 (50.00%), Query Frame = 3
Query:  162 TGLYGFDHLKSPNGFQRFVDDALERSSELVNYI-----SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYL---LPKEAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIIN 641
            +GL+  D+L +P+G   F  ++L  +  LV  +     S+    +  I  +D++SD +C V+D AE  R  HP +++V  A +    + EY++ LNTN  LY  ++    D  +   L +E  +   +L+ DFE+ GIH+     +    +  +I  L   FN  I N
Sbjct:   91 SGLFCNDNLSTPHGLIDFSKNSLREAKSLVESMLHDVKSDPAGRLSYINKLDQLSDILCRVIDVAEFIRVAHPSQKWVNAAQQTHEIMFEYMNQLNTNVELYQNLRDILSDSSVTAQLTEEEIQVGEYLKQDFERSGIHMNPSARNNFVAITQEISLLGSRFNNEIHN 258          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_ASPFU (Mitochondrial intermediate peptidase OS=Aspergillus fumigatus GN=oct1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 3
Query:  141 RTSNGVPTGLYGFDHLKSPNGFQRFVDDALERSSELVNYI---SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYLLPK---EAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDI 662
            R +   PTGL    +L SP+GF+ F + +L++   +V+ +   S +     + R +D +SD +C V+D ++  R  HPD +  E A++A   + EY++ LNT   L D +KKA  +  +  +   E    A  L  DF    IH+   +  R   L+ DI QL   F         HV +
Sbjct:   80 RAAQPKPTGLVQNQYLTSPDGFRTFANVSLQKCQAIVSKVLAASTLEEYRTMARDLDRLSDLLCRVIDLSDFIRVIHPDPQVQEAATQAYALMFEYMNVLNTTTGLNDQLKKAAANPEVTSQWSDEEKIVAQILIKDFSNSAIHMPPHERQRFVNLSNDISQLGSSFVNGAEPAKSHVSV 259          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_ASPFC (Mitochondrial intermediate peptidase OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=oct1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 3
Query:  141 RTSNGVPTGLYGFDHLKSPNGFQRFVDDALERSSELVNYI---SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYLLPK---EAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDI 662
            R +   PTGL    +L SP+GF+ F + +L++   +V+ +   S +     + R +D +SD +C V+D ++  R  HPD +  E A++A   + EY++ LNT   L D +KKA  +  +  +   E    A  L  DF    IH+   +  R   L+ DI QL   F         HV +
Sbjct:   80 RAAQPKPTGLVQNQYLTSPDGFRTFANVSLQKCQAIVSKVLAASTLEEYRTMARDLDRLSDLLCRVIDLSDFIRVIHPDPQVQEAATQAYALMFEYMNVLNTTTGLNDQLKKAAANPEVTSQWSDEEKIVAQILIKDFSNSAIHMPPHERQRFVNLSNDISQLGSSFVNGAEPAKSHVSV 259          
BLAST of FC877951 vs. ExPASy Swiss-Prot
Match: PMIP_ASPTN (Mitochondrial intermediate peptidase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=oct1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 60/219 (27.40%), Postives = 99/219 (45.21%), Query Frame = 3
Query:   18 RRLPRTAAAPNQMWTLIRRTAPFVGCKSCYSDHSTTRHFYTRTS-----------NGVPTGLYGFDHLKSPNGFQRFVDDALERSSELVNYI---SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGYLL---PKEAHRAANHLRSDFEKGGIHLCADKLDRVNQLNMDIFQLCREF 623
            RR  +TAA+P+   T           +   +D  T R  +   S           +  PTGL    +L SP GF+ F + +L +   +V+ +   S +    ++ R +D +SD +C V+D ++  R  HPD +  E A++A   + +Y++ LNT   L D +KKA  +  +      E    A  L  DF    IH+  ++  R   L+ +I QL   F
Sbjct:   28 RRSLKTAASPSPQSTSFEYNRSAHNTQKSTTDDETLRRVFDSPSFWKEFSQRSSLHTKPTGLVQNQYLTSPEGFRTFANVSLHKCQAIVHKVLAASTLEEYRDMARDLDRLSDLLCRVIDLSDFIRVIHPDPQVQEAATQAYALMFDYMNVLNTTTGLNDQLKKAAANPDVTSHWSAEEKIVAQILIKDFSNSAIHMPPNERQRFVNLSNEISQLGSNF 246          
The following BLAST results are available for this feature:
BLAST of FC877951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PMIP_ASHGO5.329e-1529.21Mitochondrial intermediate peptidase OS=Ashbya gos... [more]
PMIP_YARLI6.960e-1528.82Mitochondrial intermediate peptidase OS=Yarrowia l... [more]
PMIP_NEUCR6.960e-1531.18Mitochondrial intermediate peptidase OS=Neurospora... [more]
PMIP_NEOFI6.960e-1530.00Mitochondrial intermediate peptidase OS=Neosartory... [more]
PMIP_YEAST9.090e-1529.41Mitochondrial intermediate peptidase OS=Saccharomy... [more]
PMIP_YEAS79.090e-1529.41Mitochondrial intermediate peptidase OS=Saccharomy... [more]
PMIP_PICST9.090e-1529.17Mitochondrial intermediate peptidase OS=Pichia sti... [more]
PMIP_ASPFU9.090e-1530.00Mitochondrial intermediate peptidase OS=Aspergillu... [more]
PMIP_ASPFC9.090e-1530.00Mitochondrial intermediate peptidase OS=Aspergillu... [more]
PMIP_ASPTN2.645e-1427.40Mitochondrial intermediate peptidase OS=Aspergillu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877951 ID=FC877951; Name=FC877951; organism=Citrus clementina; type=EST; length=795bp
TTTTGACGTTCGCACAGCGGCGCCTCCCCCGCACTGCCGCAGCACCAAAT
CAAATGTGGACCCTAATCCGCAGAACCGCTCCTTTCGTCGGTTGCAAATC
GTGTTATTCGGATCATTCCACGACCCGCCATTTCTACACACGGACCTCCA
ACGGAGTCCCTACCGGTCTCTACGGTTTTGACCACTTGAAGTCTCCCAAT
GGCTTTCAACGTTTCGTCGATGACGCCCTCGAGAGGTCCAGTGAATTGGT
TAATTATATATCCGAAATGCCTTCATCTGTGGAAATTATTCGAGCAATGG
ATGAGATTTCAGATGCAGTCTGTTCCGTTGTTGATTCTGCGGAGCTATGT
AGACAAACTCATCCTGACAGAGAATTTGTTGAGGAGGCTAGTAAGGCATC
AATGAGAATCAGTGAATATCTACATTATCTGAATACAAATCATACTCTGT
ATGATGCGGTAAAAAAAGCCGAGCTAGATGGTTATTTGCTTCCTAAGGAA
GCTCATAGGGCTGCTAATCACCTACGTAGTGACTTTGAAAAGGGTGGAAT
TCATCTCTGTGCTGATAAACTAGATCGTGTAAATCAGCTAAATATGGATA
TTTTTCAACTGTGCAGAGAGTTCAATCAAAATATTATAAATGATCCAGGT
CATGTGGATATATTTCCAGAATCACGTATCCCGAAACATATTCACCATCT
CCTTAAGCCTATTTGTCGATTGACATCCGGACCATCAAGGGAATCGTTAA
GATCATGGGATAACAAGAAAGAAAAAGGATTTCGCATAACAACTG
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