FC877958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.787e-44 Identity = 100/258 (38.76%), Postives = 156/258 (60.47%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGGAAI--PR---------QXXXXXXXXXXXXXXITDSYDSYNAAKNEKFSKPLASRGK--GMQLGKKNKTGSMFDQVR 848 MV+L+A+I ++SGK +++RQF M R R+E LLA+FPKL T QHT VE +NVR+VYQP++ LY++LITN+QSNIL+D+ TL L +++V SLDE + + AFEL+ AFDE + G +EN+T+ Q+K + +MESHEE+ +++ ++K E + K+KA +L+ + E + + GG +AI PR ++ DS+ + + S + GK GM+LGK KT + ++ Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDK-GGYSAISGPRVVEKAFGDMSITGSGFGSGSGLGGLSMDMDSFASKPKGRPSAAATAPGKGLGMKLGKTQKTNQFLESLK 257
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2) HSP 1 Score: 172.94 bits (437), Expect = 2.185e-42 Identity = 94/266 (35.34%), Postives = 153/266 (57.52%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLG-GGAAIPRQ-XXXXXXXXXXXXXXITDSYDSYNAAKNEKFSKPLASRGK-----GMQLGKKNKTGSMFDQVRNDLGAEAETNAPLA 890 MV+L+A+I ++SGK +++RQF M R R++ LLA+FPKL + QHT VE +NVR+VYQP++ LY++LITN+QSNIL+D+ TL L ++++ SLDE + + AFELL AF E ++ G +EN+T++Q+K + +MESHEE++ +++ ++K E + +RK ++E + + + + G G P I DS+ + S P + GM+L K KT + ++ + E P A Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGGFGSLRTPNSFSDMGIRGGGPGGDPIFGDMDSFTHKAKGRPSAPAPASASTKVPGGMKLSKAQKTNQFLESLKAEGEVILEDTQPSA 266
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 1.416e-41 Identity = 77/175 (44.00%), Postives = 130/175 (74.29%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSR 638 MV+L+AAI +SGK I++R + M R R+E LLA+FPKL QHT +E +NVR+VYQP++ L+++L+T +QSNIL+D++TL L +++V SLDE I+R +FEL+ AFDEV++ G++E++T++Q+K + +MESHEE++ +++ ++K + + KRKA +++ + E ++ Sbjct: 1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK 175
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_CAEEL (Probable coatomer subunit delta OS=Caenorhabditis elegans GN=C13B9.3 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.325e-39 Identity = 85/178 (47.75%), Postives = 123/178 (69.10%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQF-RQMQRSRVEALLASFPKLADTAS-----QHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKE 629 MV+++A I +++GK ++ARQF M RSR+E L+ +FPKL QHT VE D+VR+VY PLD +Y+VL+T + SNIL+D+ TL LF +V+ C+S +E+EI F+L+ AFDEVVT GYRE++ L+QI+TF +M+SHEER+ I +E A + KAK+L+ +KE Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKE 178 The following BLAST results are available for this feature:
BLAST of FC877958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877958 ID=FC877958; Name=FC877958; organism=Citrus clementina; type=EST; length=909bpback to top |