FC877958

Overview
NameFC877958
Unique NameFC877958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.787e-44
Identity = 100/258 (38.76%), Postives = 156/258 (60.47%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGGAAI--PR---------QXXXXXXXXXXXXXXITDSYDSYNAAKNEKFSKPLASRGK--GMQLGKKNKTGSMFDQVR 848
            MV+L+A+I ++SGK +++RQF  M R R+E LLA+FPKL  T  QHT VE +NVR+VYQP++ LY++LITN+QSNIL+D+ TL L +++V     SLDE  + + AFEL+ AFDE +  G +EN+T+ Q+K + +MESHEE+  +++ ++K  E  +  K+KA +L+  + E  +  + GG +AI  PR                        ++   DS+ +    + S    + GK  GM+LGK  KT    + ++
Sbjct:    1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDK-GGYSAISGPRVVEKAFGDMSITGSGFGSGSGLGGLSMDMDSFASKPKGRPSAAATAPGKGLGMKLGKTQKTNQFLESLK 257          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.185e-42
Identity = 94/266 (35.34%), Postives = 153/266 (57.52%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLG-GGAAIPRQ-XXXXXXXXXXXXXXITDSYDSYNAAKNEKFSKPLASRGK-----GMQLGKKNKTGSMFDQVRNDLGAEAETNAPLA 890
            MV+L+A+I ++SGK +++RQF  M R R++ LLA+FPKL  +  QHT VE +NVR+VYQP++ LY++LITN+QSNIL+D+ TL L ++++     SLDE  + + AFELL AF E ++ G +EN+T++Q+K + +MESHEE++ +++ ++K  E  +  +RK  ++E  + +  +  + G G    P                 I    DS+      + S P  +        GM+L K  KT    + ++ +     E   P A
Sbjct:    1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGGFGSLRTPNSFSDMGIRGGGPGGDPIFGDMDSFTHKAKGRPSAPAPASASTKVPGGMKLSKAQKTNQFLESLKAEGEVILEDTQPSA 266          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.416e-41
Identity = 77/175 (44.00%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSR 638
            MV+L+AAI  +SGK I++R +  M R R+E LLA+FPKL     QHT +E +NVR+VYQP++ L+++L+T +QSNIL+D++TL L +++V     SLDE  I+R +FEL+ AFDEV++ G++E++T++Q+K + +MESHEE++ +++ ++K  +  +  KRKA +++  + E ++
Sbjct:    1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK 175          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_CAEEL (Probable coatomer subunit delta OS=Caenorhabditis elegans GN=C13B9.3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.325e-39
Identity = 85/178 (47.75%), Postives = 123/178 (69.10%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQF-RQMQRSRVEALLASFPKLADTAS-----QHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKE 629
            MV+++A I +++GK ++ARQF   M RSR+E L+ +FPKL          QHT VE D+VR+VY PLD +Y+VL+T + SNIL+D+ TL LF +V+   C+S +E+EI    F+L+ AFDEVVT GYRE++ L+QI+TF +M+SHEER+   I   +E  A +    KAK+L+  +KE
Sbjct:    1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKE 178          
The following BLAST results are available for this feature:
BLAST of FC877958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPD2_ORYSJ1.787e-4438.76Coatomer subunit delta-2 OS=Oryza sativa subsp. ja... [more]
COPD3_ORYSJ2.185e-4235.34Coatomer subunit delta-3 OS=Oryza sativa subsp. ja... [more]
COPD_ARATH1.416e-4144.00Coatomer subunit delta OS=Arabidopsis thaliana GN=... [more]
COPD_CAEEL1.325e-3947.75Probable coatomer subunit delta OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877958 ID=FC877958; Name=FC877958; organism=Citrus clementina; type=EST; length=909bp
AGACAATTCACTAACAAACCCGCGCAAACAATACCAGCACTGCTCGGAGC
AAACATATATTGGCCTTAAGGTTACTAAATTTCTCGCCAGACTAGCACAA
AGAGTTGCCCAAGATGGTCATTCTCTCGGCGGCTATCACCACCCGCTCAG
GGAAGCCCATTCTCGCCAGGCAGTTCCGCCAAATGCAAAGGTCGAGGGTG
GAGGCGCTCCTGGCATCTTTCCCCAAACTCGCAGACACCGCCTCGCAACA
CACCACCGTCGAGCAGGACAATGTCCGCTTCGTATACCAGCCGCTGGACG
AGCTTTACATGGTCCTAATCACAAACCGACAATCGAACATCCTCCAGGAC
ATTTCCACACTGCACCTGTTCGCCCAGGTGGTCGGATCGATTTGCAAGAG
TCTGGACGAGAGGGAGATCACCCGTTGCGCATTCGAGCTATTGTCTGCAT
TCGATGAGGTCGTCACGCAGGGCTACCGGGAAAACCTCACCCTCAGCCAG
ATCAAGACTTTCCTGGACATGGAATCGCACGAGGAGCGCATCCAGGAGAT
TATTGCAAGGAACAAGGAGCTCGAGGCCACAGAAGAGCGCAAGCGCAAGG
CCAAGCAACTTGAGATGCAGCGCAAGGAGGTGAGCCGGGCACAGCGCCTG
GGCGGTGGTGCTGCGATCCCTCGCCAGCCTACATACCCTACATACACACC
TCCACCTGCGGCTCCCGCAATCACGGACAGCTACGATTCCTACAATGCTG
CTAAGAACGAGAAGTTCAGCAAGCCTCTGGCATCACGAGGAAAGGGTATG
CAGCTCGGCAAGAAGAACAAGACCGGCAGCATGTTTGATCAAGTGCGCAA
CGATCTGGGCGCAGAAGCCGAAACGAACGCTCCTTTGGCTGGCGTTCCCG
TACCACAAG
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