FC877963

Overview
NameFC877963
Unique NameFC877963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.887e-97
Identity = 160/238 (67.23%), Postives = 197/238 (82.77%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MGR IR QRKGAG +FKSH  HRKG ++ R LD+ ER+GY+KG+V +IIHDPGRGAPLA + FR P++Y   K   +AAEGM+TGQF++CG KA + +GN++PV ++PEG  +CNVE+  GDRGV+ARASG+YA +I+HNPD   TR++LPSGAKK++ S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:    1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 3.192e-96
Identity = 160/238 (67.23%), Postives = 194/238 (81.51%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MGRVIRAQRK +G +F++HT  RKG AQ R+LDF ER+GY++GVV +IIHDPGRGAPLA+V FR+P+ Y    E F+A EGMYTGQFVYCGK A L VGNVLPV  +PEG ++ NVE   GDRG L R+SG+Y +I+ H+ D   TRVKLPSGAKK++PS  R ++G VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HPHGGGNHQH+GH++TV R + PGQKVGLI
Sbjct:    1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 6.020e-95
Identity = 161/238 (67.65%), Postives = 197/238 (82.77%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GVV +I+HD GRGAPLA+V FR P++Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKKII S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 345.895 bits (886), Expect = 1.751e-94
Identity = 159/238 (66.81%), Postives = 196/238 (82.35%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++G+V +I+HD GRGAPLA+V FR P++Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKK+I S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.634e-93
Identity = 155/238 (65.13%), Postives = 193/238 (81.09%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GVV +I+HD GRGAPLA+V FR P++Y  ++E FIA EG++TGQF+Y GK A+L VGN+LP+ S+PEG +V NVE   GDRG LAR SG+Y ++I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.450e-58
Identity = 116/239 (48.54%), Postives = 151/239 (63.18%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ I  QR G G+  F+S +H R GPA++  L        +KG + +++HDPGR  PLA++       ++       A EGMY GQ +  G  A +  GN+LP+  IPEG  + N+E   GD G   R+SG YA+I+        T+V+LPSG    +P+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:    1 MGKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTFLTP-----AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGRA--GTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.004e-57
Identity = 116/239 (48.54%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.712e-57
Identity = 116/239 (48.54%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T V+LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG I
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.982e-57
Identity = 114/239 (47.70%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.450e-56
Identity = 113/239 (47.28%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +Q +G G+  ++S +H RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
The following BLAST results are available for this feature:
BLAST of FC877963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_CAEEL2.887e-9767.2360S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL2_SCHPO3.192e-9667.2360S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL2_CANGA6.020e-9567.6560S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST1.751e-9466.8160S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO5.634e-9365.1360S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_STAMF3.450e-5848.5450S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_METM51.004e-5748.5450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP1.712e-5748.5450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM74.982e-5747.7050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM61.450e-5647.2850S ribosomal protein L2P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO20RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877963 ID=FC877963; Name=FC877963; organism=Citrus clementina; type=EST; length=870bp
CTCTCAATAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGGTT
CGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGC
AGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGA
GATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTC
GTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAG
GGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGAT
GGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTT
GCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCT
GGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAG
GGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAG
CGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTC
AAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCC
TAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAG
GTAACCACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCT
CCTGGCCAGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAG
AGGACAAGCTGCTGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTT
GTGTTAAACAAATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCGCT
ACCTCTAATTAATGGACACC
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