FC877963

Overview
NameFC877963
Unique NameFC877963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.396e-56
Identity = 113/239 (47.28%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +Q +G G+  ++S +H RKG  ++RS D  E+ G + G V +++HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.396e-56
Identity = 113/239 (47.28%), Postives = 153/239 (64.02%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +Q +G G+  ++S +H RKG  ++RS D  E+ G + G V +++HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.227e-55
Identity = 116/239 (48.54%), Postives = 151/239 (63.18%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ + +QR+G G+  ++S +H  KG  ++R+ D  E  G LKG V +I+HDPGR AP+ARV F +      ++ L +A E +   + V CG KA +  GN LP+  IPEG  + N+E+  GD G L R+SG YA +I+H  D D   ++LPSG  K +   CRA +G VAGGGR EKP LKAG  YH  R K      VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:    1 MGKRLISQRRGRGTPTYRSASHRFKGKIKYRAYDSIESEGSLKGKVVDIMHDPGRTAPVARVKFENG-----EERLILAPEALMLNEEVECGVKARVKPGNSLPLSEIPEGTPIYNIENRPGDGGKLVRSSGTYASLITH--DADKAVIELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.227e-55
Identity = 115/240 (47.92%), Postives = 153/240 (63.75%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 724
            MG+ + +QR+G GS V+   +H R+G A++R  D  E+ G + G + +I+HDPGR AP+A+V +        ++ L +  EG+  G  + CG  A +  GN+LP+ +IPEG  V N+E   GD G L RA G YA I++H  D + T VKLPSG  K + S CRA IG VAGGGR EKP +KAG  YH  + K   WP+VRGVAMN V+HP GGG HQH G  +TV R+  PPG+KVG I
Sbjct:    1 MGKRLISQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYE-----TGEEGLLVVPEGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTH--DGERTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.022e-54
Identity = 118/239 (49.37%), Postives = 146/239 (61.09%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +R QR G G+  ++S  H   GPA++  L        L+G V E+IHDPGR  PLARV       +     L  AAEGMY GQ +  G  A    GN+LP+  IPEG  V NVE   GD G LAR +G YA+++        T ++LPSG  K +P+  RA IG  AG GR EKP++KAG AYHK++VK   WP+VRGVAMN V+HP GGG HQH G  STV R APPG+KVG I
Sbjct:    1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLARVVREDGVEF-----LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.155e-54
Identity = 119/239 (49.79%), Postives = 146/239 (61.09%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ I  QR+G  S VFK+  H    PA++  LD  +     K VV +++HDPGR  PLA+V       +        A EGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G   RASG YAVI+        T+V+LPSG    +P+  RAMIG +AGGGR EKPLLKAG AY+K+  K   WPKVRGVAMN   HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:    1 MGKRIIPQRRGKASPVFKTPDHIHVAPARYPLLDPSKT---YKAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGRA--GGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.342e-53
Identity = 110/239 (46.03%), Postives = 150/239 (62.76%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ I  QR+G G + F+S  H +  PA++        +  ++GV+ EI+H+PGR  P++ V   +      Q+  +I  EG+Y GQ +  GK A +  GNVLP+  IP+G++VCNVE   GD G +AR SG YA++ SH  + D   ++LPS  +K++ + CRA IG VAG GR EKP +KAG  Y+  R     WP VRGVAMNPV HPHGGG+H+  G  +TV R APPGQKVG I
Sbjct:    1 MGKRILVQRRGRGGIQFRSKDHLKIAPARYPQ---DGMDNLMRGVIKEILHEPGRHTPISLVELENG-----QEFYYIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.364e-53
Identity = 109/239 (45.61%), Postives = 146/239 (61.09%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +++Q +G G+  + S TH RKG  ++R  D  ER   + G + +I+HDPGR +P+ARV + +      ++ L +  EGM     + CG  A +  GNVLP+  +PEG  V N+E   GD G L R+ G YA +I+H  D   T +KLPSG  K +   CRA IG VAGGGR EKP+ KAG  YH  + K   WP+VRGVAMN V+HP GGGN QH G  +T+ R   PG+KVG I
Sbjct:    1 MGKRLQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARVRYDNG-----EERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 113/237 (47.68%), Postives = 143/237 (60.34%), Query Frame = 2
Query:   11 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718
            MGR I+ QR+G G S F++ +H  K     +     E    L G V ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 113/237 (47.68%), Postives = 143/237 (60.34%), Query Frame = 2
Query:   11 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718
            MGR I+ QR+G G S F++ +H  K     +     E    L G V ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
The following BLAST results are available for this feature:
BLAST of FC877963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METVS9.396e-5647.2850S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA9.396e-5647.2850S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METTH1.227e-5548.5450S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_METJA1.227e-5547.9250S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_AERPE3.022e-5449.3750S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_DESK15.155e-5449.7950S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_KORCO3.342e-5346.0350S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_META34.364e-5345.6150S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_HALSA5.700e-5347.6850S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS35.700e-5347.6850S ribosomal protein L2P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO20RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877963 ID=FC877963; Name=FC877963; organism=Citrus clementina; type=EST; length=870bp
CTCTCAATAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGGTT
CGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGC
AGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGA
GATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTC
GTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAG
GGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGAT
GGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTT
GCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCT
GGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAG
GGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAG
CGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTC
AAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCC
TAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAG
GTAACCACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCT
CCTGGCCAGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAG
AGGACAAGCTGCTGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTT
GTGTTAAACAAATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCGCT
ACCTCTAATTAATGGACACC
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