FC877963

Overview
NameFC877963
Unique NameFC877963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.723e-53
Identity = 115/239 (48.12%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +  QR+G GS  FKS +H  +G  ++  L++ +    L+GVV EI+HDPGR AP+ARV F +       ++L IA EG+  GQ +Y G  A + VGN LP+  IPEG  V N+E   GD G   RA G YA+++S  PD     V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:    1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYTQEKT-LRGVVEEIMHDPGRTAPVARVKFENGI-----EKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDK--VIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.723e-53
Identity = 111/239 (46.44%), Postives = 148/239 (61.92%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +  QR+G G+  ++S +H  +G   +RS D  ER G L G+V +IIHDPGR AP+A V F +      +++L +A E +     + CG  A++  GN LP+  IPEG  V N+E++ GD G   R+SG YA +I+H  D D T +++PSG  K      RA +G VAGGGR EKP LKAGN YH  + K      VRGVAMN V+HPHGGGN QH G  +T+ R AP G+KVG I
Sbjct:    1 MGKRLIIQRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNG-----EEKLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.829e-52
Identity = 113/239 (47.28%), Postives = 148/239 (61.92%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +  QR+G G+  F++ +H  +G  ++  L+  +    L+GVV EI+HDPGR AP+ARV F         K+L +A EG+  GQ +Y G +A + +GN LP+  IPEG  V N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.829e-52
Identity = 111/237 (46.84%), Postives = 143/237 (60.34%), Query Frame = 2
Query:   11 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718
            MGR I+ QR+G G S F++ +H  K     +     E +  + G + +I HDP R AP+A V F    R      L +A EG+  G+ +  G  A +  GN LP+R IPEG  VCNVE  VGD G  ARASG  A +++H  D D   ++LPSG  K +   C+A IG VAGGGRTEKP +KAG  +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.695e-52
Identity = 112/239 (46.86%), Postives = 150/239 (62.76%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +R QR G G+  +++  H R  P ++ S +  + +   +G V E+ HDPGR  PLA +   +   +        AAEGMYTGQ V  G  A  + GN+LP+ +IPEG  + NVE   GD G LAR+ G YA+++  +   ++  ++LPSG  K + +  RA IG  AG GR EKPLLKAGNAY+K++ K   WP VRGVAMN V HPHGGGNHQ  G+ +TV R+APPGQKVG I
Sbjct:    1 MGKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.825e-52
Identity = 113/239 (47.28%), Postives = 148/239 (61.92%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +  QR+G G+  F++ +H  +G  ++  L+  +    L+GVV EI+HDPGR AP+ARV F         K+L IA EG+  GQ +Y G +A + +GN LP+  IPEG  V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.302e-52
Identity = 109/239 (45.61%), Postives = 141/239 (59.00%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ IR QR G G   +++ +H  +G  + R  D  E+ G + G V E++HDP R AP+ARV F        ++ L +  EG   G  + CG  A +  GN LP+  IPEG  + N+E   GD G  ARA G YA II+H  D   T V+LPSG  +     CRA IG ++GGG+ EKP +KAG  Y+  R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG I
Sbjct:    1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.231e-52
Identity = 112/239 (46.86%), Postives = 148/239 (61.92%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +  QR+G GS  F+S +H  +G  ++  L++ + +  L+GVV EI+HDPGR AP+ARV F +       ++L IA EG+  GQ +Y G  A + +GN LP+  IPEG  V N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:    1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQ-DKTLRGVVEEIMHDPGRTAPVARVRFENGM-----EKLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.231e-52
Identity = 109/239 (45.61%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGSVFKSHTHHR-KGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+ +  QR+G G+       HR K   ++RS D  E+ G +KG+V +I+HDP R AP+A V F +      +K+  +A E +     + CG  A +  GN LP+  IPEG  + ++E+  GD G   R+SG YA +I+H  D + + V+LPSG  K +   CRA IG VAGGGR EKP LKAGN +H ++ K   +  VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:    1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 203.756 bits (517), Expect = 1.075e-51
Identity = 111/237 (46.84%), Postives = 143/237 (60.34%), Query Frame = 2
Query:   11 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718
            MGR I+ QR+G G S F++ +H  K   + R ++ G+    + G V +I HDP R AP+A V F    R      L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   VKLPSG  K +   CRA IG VAGGGRT+KP +KAGN +HK + +   WP VRGVAMN V+HP GGG  QH G   ++ R+APPG+KVG
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227          
The following BLAST results are available for this feature:
BLAST of FC877963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PYRFU9.723e-5348.1250S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_METST9.723e-5346.4450S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_THEGJ2.829e-5247.2850S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_HALWD2.829e-5246.8450S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_IGNH43.695e-5246.8650S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_PYRKO4.825e-5247.2850S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_METKA6.302e-5245.6150S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_PYRAB8.231e-5246.8650S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_METS38.231e-5245.6150S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_HALMA1.075e-5146.8450S ribosomal protein L2P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO20RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877963 ID=FC877963; Name=FC877963; organism=Citrus clementina; type=EST; length=870bp
CTCTCAATAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGGTT
CGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGC
AGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGA
GATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTC
GTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAG
GGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGAT
GGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTT
GCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCT
GGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAG
GGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAG
CGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTC
AAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCC
TAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAG
GTAACCACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCT
CCTGGCCAGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAG
AGGACAAGCTGCTGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTT
GTGTTAAACAAATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCGCT
ACCTCTAATTAATGGACACC
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