FC877963
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 2.395e-51 Identity = 110/239 (46.03%), Postives = 148/239 (61.92%), Query Frame = 2 Query: 11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ + QR+G GS F+S +H +G ++ L++ + + ++GVV EI+HDPGR AP+ARV F + ++L IA EG+ GQ +Y G A + +GN LP+ IPEG + N+E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKPL+KAG AY+K++ + WP RGV MN V HP GG H H G +T R APPG+KVG I Sbjct: 1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQ-DKTIRGVVEEIMHDPGRTAPVARVKFENGM-----EKLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51 Identity = 108/239 (45.19%), Postives = 148/239 (61.92%), Query Frame = 2 Query: 11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ I +Q +G G+ +++ +H + A + + F ++G+V +I+HDP R AP+A V + +K+ +A EG Y GQ + CG A + GN LP+ SIPEG +CN+E G G ARASG Y ++++H D T V+LPSG K + C A IG VAGGGRTEKPL+KAG +++K+R K WP+VRGVAMN V+HP GGG QH G TV R PPG+KVG I Sbjct: 1 MGKRIISQNRGKGTPTYRAPSHRYR--ADIKHIKFS--GDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAH--DVGATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51 Identity = 111/237 (46.84%), Postives = 141/237 (59.49%), Query Frame = 2 Query: 11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718 MGR I+ QR+G G F++ +H K + L+ + + G + I HDP R APLA + F R L +A EG+ G + G A + GN LP+ IPEG VCNVE + GD G ARASG A +++H D D V+LPSG K + CRA IG VAGGGRTEKP +KAGN YHK + + +P+VRGVAMN V+HP GGG QH G +V RDAPPG+KVG Sbjct: 1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 6.968e-51 Identity = 111/237 (46.84%), Postives = 141/237 (59.49%), Query Frame = 2 Query: 11 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718 MGR I QR+G G S F++ +H K R++ E + + G V +I HDP R APLA V F R L +A EG+ G + G A + GN +P+ IPEG VCNVE GD G ARASG A +++H D + V+LPSG + + CRA IG VAGGGRTEKP +KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RD PPG+KVG Sbjct: 1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVG 227
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 9.100e-51 Identity = 114/240 (47.50%), Postives = 148/240 (61.67%), Query Frame = 2 Query: 11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ + QR+G GS +++S PA++ L L+G V E++HDPGR PLA + + E +I AAEGMY GQ + G A + GN+LPV IPEG V N+E GD G L RA G YA+I+ + + T ++LPSG K +P+ RA IG VAG GR EKPLLKAG AY+K+ K + WP+VRGVAMN V HPHGGG+HQ +TV R+APPG+KVG I Sbjct: 1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLT----PVTLRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.648e-50 Identity = 104/238 (43.70%), Postives = 141/238 (59.24%), Query Frame = 2 Query: 11 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ + +Q +G GS T R FG+ ++G++ E++HDP R P+ RV F + ++ L +A EG+ G + CG A + GN LP+ IPEG +CN+E GD G AR+SG YA+I++H + T V++PSG K + CRA IG VAGGGRTEKP ++AGN ++K K WP VRGVAMN V+HP GGG QH G TV R+ PPG+KVG I Sbjct: 1 MGKRLMSQNRGKGSPTYRATSSRFKADLEHIKTFGDET--IEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.823e-49 Identity = 110/239 (46.03%), Postives = 145/239 (60.67%), Query Frame = 2 Query: 11 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ I QR+G GS F+S + R GP ++ L G +G KG V +I+H+PG AP+A++ + + AAEG+Y GQ V GK A+ GN++ + IPEG ++ NVE GD G ARA G YAV+I P+ + T ++LPSG + S RA +G VAGGGR EKP LKAG YH+ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPL--GVISG--KGYVVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 4.994e-49 Identity = 109/239 (45.61%), Postives = 146/239 (61.09%), Query Frame = 2 Query: 11 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ + QR+G G+ F++ +H +G ++ L+ + L G V EI+HDPGR AP+ARV F + ++L IA EG+ G+ + G A + +GN LP+ IPEG+ V ++E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGM-----EKLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 4.994e-49 Identity = 109/239 (45.61%), Postives = 143/239 (59.83%), Query Frame = 2 Query: 11 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ I QR+G GS F+S + R GP ++ G +G+V EI+H+PG AP+A++ + + AAEG+Y GQ + G A VGNVLP+ IPEG +V NVE GD G AR+ G YA++I P+ + T V+LPSG + + RA IG VAGGGR EKP +KAG YH+ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPNISG------RGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 226
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.453e-48 Identity = 106/239 (44.35%), Postives = 142/239 (59.41%), Query Frame = 2 Query: 11 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724 MG+ I QR+G GS F+S + R GP ++ L+ GY V E++H+PG AP+AR+ + AAEG+Y GQ + G AT GN++ + IPEG ++ NVE GD G AR+SG YAV++ P+ + T ++LPSG + + RA +G VAGGGR EKP LKAG YH+ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228 The following BLAST results are available for this feature:
BLAST of FC877963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877963 ID=FC877963; Name=FC877963; organism=Citrus clementina; type=EST; length=870bpback to top |