FC877963

Overview
NameFC877963
Unique NameFC877963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.507e-37
Identity = 95/237 (40.08%), Postives = 129/237 (54.43%), Query Frame = 2
Query:   11 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 718
            MG+ I AQR+G GS V++S +H   G  ++       R+G  K  + +II  PGR  P+  +          +K   IA  G Y  Q ++ G   +  +G+V  + +IP+G+ V N+E   GD G   RA+G  A++ISH        +KLPSG  K     CRA +G +AG G  + P+LKAG      + K      VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG
Sbjct:    1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.842e-36
Identity = 94/240 (39.17%), Postives = 131/240 (54.58%), Query Frame = 2
Query:   11 MGRV-IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 724
            MG+V +  QR+G GS  F+S TH   G  +  + D       +KG V  +I D    APL  V + +       + L  A  G+  G  VY GK+A   +G++ P+  IPEG  +  +E++ GD G L RASGD+A+++      D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I
Sbjct:    1 MGKVRLLVQRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.082e-27
Identity = 81/222 (36.49%), Postives = 122/222 (54.95%), Query Frame = 2
Query:   14 GRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 670
            G+V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.082e-27
Identity = 81/222 (36.49%), Postives = 122/222 (54.95%), Query Frame = 2
Query:   14 GRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 670
            G+V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.041e-26
Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 2
Query:   92 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 670
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +AA+G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IP+ CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 76/215 (35.35%), Postives = 110/215 (51.16%), Query Frame = 2
Query:   20 VIRAQRKGAGSVFKSHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 652
            ++   RK AG  F+      HR G  +  +R +DF      + G VA I +DP R A +A V +        +K   +A  G+  GQ +  G +A + VGN LP+R+IP G ++ N+E + G    + R++G  A +++   + D   V+LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HPHGGG
Sbjct:   33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.728e-25
Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   92 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 670
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.728e-25
Identity = 79/234 (33.76%), Postives = 115/234 (49.15%), Query Frame = 2
Query:   20 VIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 712
            VI  +  G  +  K    H+ G  +  +R +DF      +   V  I +DP R A +  + +        +K   +A EG+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HPHGGG + Q IG  + +    P G+K
Sbjct:   36 VILKKNSGRNNQGKITVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKK 256          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.948e-25
Identity = 76/217 (35.02%), Postives = 117/217 (53.92%), Query Frame = 2
Query:   23 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 670
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  + N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
BLAST of FC877963 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 79/226 (34.96%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   20 VIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 673
            V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:   34 VVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
The following BLAST results are available for this feature:
BLAST of FC877963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PICTO1.507e-3740.0850S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_NANEQ2.842e-3639.1750S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL2_BORRA1.082e-2736.4950S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL1.082e-2736.4950S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_EDWI92.041e-2636.7950S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_DESAP7.758e-2635.3550S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RL2_PECCP1.728e-2535.7550S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_MYCAP1.728e-2533.7650S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_BORGA2.948e-2535.0250S ribosomal protein L2 OS=Borrelia garinii GN=rp... [more]
RL2_THEPX3.850e-2534.9650S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YO20RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877963 ID=FC877963; Name=FC877963; organism=Citrus clementina; type=EST; length=870bp
CTCTCAATAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGGTT
CGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGC
AGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGA
GATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTC
GTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAG
GGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGAT
GGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTT
GCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCT
GGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAG
GGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAG
CGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTC
AAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCC
TAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAG
GTAACCACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCT
CCTGGCCAGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAG
AGGACAAGCTGCTGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTT
GTGTTAAACAAATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCGCT
ACCTCTAATTAATGGACACC
back to top