FC877965

Overview
NameFC877965
Unique NameFC877965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_RAT (Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIVSSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_DANRE (Presenilin-1 OS=Danio rerio GN=psen1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 50/169 (29.59%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ T  Q+   ++LNA++ + +I ++T +LV+LY Y     ++ ++ FS   +L                  +D FT  ++++NF +VG++ +   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  102 LIYTPFREDTETVGQRALHSMLNAIIMISVIVVMTLVLVVLYKYRCYKVIQAWLFFSNLLLLFFFSLIYLGEVFKTYNVAMDYFTLALIIWNFGVVGMICIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAAISVYDLLAVLCPKGPLRILVETAQERNE 269          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_CANFA (Presenilin-1 OS=Canis familiaris GN=PSEN1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 51/174 (29.31%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  +D  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  107 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFLFSFIYLGEVFKTYNVAMDYITVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 279          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_XENLA (Presenilin-2 OS=Xenopus laevis GN=psen2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+++  ++L  +VLN L+ + +I ++T  LVLLY Y    F+  ++  S+  +L                  +D  T F++++NF  VG++ +   G P+ L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  122 LIYTPFSEDTTSVGERLLNSVLNTLIMISVILVMTIFLVLLYKYRCYKFIHGWLILSSLMLLFMFTYIYLSEVFKTYNIAMDYPTLFMVIWNFGAVGMICIHWKG-PLQLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLLAVLCPKGPLRMLVETAQERNE 289          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_BOVIN (Presenilin-1 OS=Bos taurus GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 51/174 (29.31%), Postives = 87/174 (50.00%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA++ + +I I+T LLV+LY Y     +  ++  S+  +L                  +D  +  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  109 RKDGQLIYTPFTEDTETVAQRALHSILNAVIMISVIVIMTILLVVLYKYRCYKVIHAWLIVSSLLLLFFFSFIYLGEVFKTYNVAMDYISVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 281          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_RAT (Presenilin-2 OS=Rattus norvegicus GN=Psen2 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVFKTYNVAMDYPTLFLAVWNFGAVGMVCIHWKG-PLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_MOUSE (Presenilin-2 OS=Mus musculus GN=Psen2 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLAVWNFGAVGMVCIHWKG-PLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_CHICK (Presenilin-1 OS=Gallus gallus GN=PSEN1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 49/174 (28.16%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +++ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  +D  T  ++++NF +VG++ +   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  109 RKDGQLIYTPFTEETDTIGQRALNSILNAAIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSFIYLGEVFKTYNVAMDYITVALIIWNFGVVGMICIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 281          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN_DROME (Presenilin homolog OS=Drosophila melanogaster GN=Psn PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 45/155 (29.03%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  139 KLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDEE 600
            K   A+ N+L+ + ++ ++TFLL++LY       +  ++  S+F +L                 P+D  T  ++++NF +VG++S+   G P+ L+Q Y++ +  +MA  F K LPEWT W                P GPL++LVE A   +E+
Sbjct:  150 KFWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFTYLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQG-PLRLQQGYLIFVAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQERNEQ 303          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_PIG (Presenilin-2 OS=Sus scrofa GN=PSEN2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLITSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286          
The following BLAST results are available for this feature:
BLAST of FC877965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSN1_RAT1.975e-1529.89Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=2 SV... [more]
PSN1_DANRE2.579e-1529.59Presenilin-1 OS=Danio rerio GN=psen1 PE=1 SV=1[more]
PSN1_CANFA2.579e-1529.31Presenilin-1 OS=Canis familiaris GN=PSEN1 PE=2 SV=... [more]
PSN2_XENLA5.745e-1529.59Presenilin-2 OS=Xenopus laevis GN=psen2 PE=2 SV=1[more]
PSN1_BOVIN5.745e-1529.31Presenilin-1 OS=Bos taurus GN=PSEN1 PE=2 SV=1[more]
PSN2_RAT9.800e-1529.59Presenilin-2 OS=Rattus norvegicus GN=Psen2 PE=2 SV... [more]
PSN2_MOUSE9.800e-1529.59Presenilin-2 OS=Mus musculus GN=Psen2 PE=1 SV=3[more]
PSN1_CHICK1.280e-1428.16Presenilin-1 OS=Gallus gallus GN=PSEN1 PE=1 SV=1[more]
PSN_DROME1.672e-1429.03Presenilin homolog OS=Drosophila melanogaster GN=P... [more]
PSN2_PIG1.672e-1429.59Presenilin-2 OS=Sus scrofa GN=PSEN2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877965 ID=FC877965; Name=FC877965; organism=Citrus clementina; type=EST; length=617bp
TCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCCATC
GGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCAATC
TCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAGGGC
GCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCACTTT
CCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGAATT
ACGTGCGCTTCTCCGCCTTTTTCGTCTTAGGTACAATGGGAGGTTCGATC
TTTTTGTCGATCATTCAGCAATTCTCTATACCTGTCGATGCATTTACATG
CTTTGTACTGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGTTTT
CGGGTGGGATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATGGGA
ATCATTATGGCAGCCTGGTTTACAAAGCTGCCTGAGTGGACTACGTGGGC
CTTGCTACTGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGCCCG
GTGGGCCCCTTAAGTTGTTGGTGGAGTTGGCCTCTACTCCAGATGAGGAA
ACTTCCTGCTTTGGTGT
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