FC877965

Overview
NameFC877965
Unique NameFC877965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_MICMU (Presenilin-2 (Fragment) OS=Microcebus murinus GN=PSEN2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  100 LVYLERPDD--SSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D  S +Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T  + ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  119 LIYTPFTEDTPSVSQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLVLTVWNFGAVGMVCIHWKG-PLMLQQAYLIAISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_BOVIN (Presenilin-2 OS=Bos taurus GN=PSEN2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ +  Q+L  +VLN L+ + +I  +T  LV+LY Y    F+  ++  S+  +L                  +D  T F+ ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  120 LIYTPFSEDTPSVGQRLLNSVLNTLIMISVIVTMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 287          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_HUMAN (Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ +  Q+L  +VLN L+ + +I ++T  LV+LY Y    F+  ++  S+  +L                  +D  T  + ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_PONAB (Presenilin-2 OS=Pongo abelii GN=PSEN2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/169 (28.99%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            L+Y    +D+ +  Q+L  +VLN L+ + +I  +T  LV+LY Y    F+  ++  S+  +L                  +D  T  + ++NF  VG++ +   G P++L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVAMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_CHICK (Presenilin-2 OS=Gallus gallus GN=PSEN2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELA 582
            L+Y    +D+ +  Q+L  +VLN ++ + +I ++T  LV+LY Y    F+  ++  S+F +L                  +D  T  ++++NF  VG++ +   G P+ L+QAY++ +  +M   F K LPEW+ W                P GPL++L E A
Sbjct:  125 LIYTPFSEDTPSVGQRLLNSVLNTIIMISVIVVMTVFLVVLYKYRCYKFIHGWLILSSFMLLFLFTYIYLGEVLKTYNVAMDYPTVILIIWNFGAVGMIRIHWKG-PLQLQQAYLIMISALMVLVFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLXETA 287          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNB_DICDI (Presenilin-B OS=Dictyostelium discoideum GN=psenB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 42/139 (30.22%), Postives = 65/139 (46.76%), Query Frame = 1
Query:  181 LIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            +I + T   VLLY Y     L  ++  S   +LG+ G             P+D  T   L+FNFT+ G++ +F       + Q Y+V + ++MA   T+LP+WT +                P GPLK+LVEL+   +E
Sbjct:  234 MIIVTTVAFVLLYKYRCLKILYGWLFLSVGMMLGSFGTTFFQAMLSAANLPLDYITFAFLIFNFTVCGIIGVFWYAHQ-YVNQLYLVIISVLMAISLTRLPQWTIFTLLVIVAIYDLFAVLCPRGPLKVLVELSQERNE 371          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN_CAEEL (Presenilin sel-12 OS=Caenorhabditis elegans GN=sel-12 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 46/162 (28.40%), Postives = 74/162 (45.68%), Query Frame = 1
Query:  115 RPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R  DS  +K   ++ NALV + ++ ++T LL++ Y Y F   +  ++  S+F +L                    A      L N+ ++G++ +   G P+ L+Q Y++ M  +MA  F K LPEWT W                P GPL+ LVE A   +E
Sbjct:   89 RETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG-PLRLQQFYLITMSALMALVFIKYLPEWTVWFVLFVISVWDLVAVLTPKGPLRYLVETAQERNE 249          
The following BLAST results are available for this feature:
BLAST of FC877965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSN2_MICMU2.183e-1429.59Presenilin-2 (Fragment) OS=Microcebus murinus GN=P... [more]
PSN2_BOVIN2.851e-1429.59Presenilin-2 OS=Bos taurus GN=PSEN2 PE=2 SV=2[more]
PSN2_HUMAN4.864e-1428.99Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1[more]
PSN2_PONAB1.415e-1328.99Presenilin-2 OS=Pongo abelii GN=PSEN2 PE=2 SV=1[more]
PSN2_CHICK3.152e-1328.05Presenilin-2 OS=Gallus gallus GN=PSEN2 PE=2 SV=1[more]
PSNB_DICDI3.485e-1230.22Presenilin-B OS=Dictyostelium discoideum GN=psenB ... [more]
PSN_CAEEL2.259e-1128.40Presenilin sel-12 OS=Caenorhabditis elegans GN=sel... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877965 ID=FC877965; Name=FC877965; organism=Citrus clementina; type=EST; length=617bp
TCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCCATC
GGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCAATC
TCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAGGGC
GCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCACTTT
CCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGAATT
ACGTGCGCTTCTCCGCCTTTTTCGTCTTAGGTACAATGGGAGGTTCGATC
TTTTTGTCGATCATTCAGCAATTCTCTATACCTGTCGATGCATTTACATG
CTTTGTACTGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGTTTT
CGGGTGGGATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATGGGA
ATCATTATGGCAGCCTGGTTTACAAAGCTGCCTGAGTGGACTACGTGGGC
CTTGCTACTGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGCCCG
GTGGGCCCCTTAAGTTGTTGGTGGAGTTGGCCTCTACTCCAGATGAGGAA
ACTTCCTGCTTTGGTGT
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