FC877965
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_MICMU (Presenilin-2 (Fragment) OS=Microcebus murinus GN=PSEN2 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14 Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 100 LVYLERPDD--SSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 L+Y +D S +Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T + ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P GPL++LVE A +E Sbjct: 119 LIYTPFTEDTPSVSQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLVLTVWNFGAVGMVCIHWKG-PLMLQQAYLIAISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_BOVIN (Presenilin-2 OS=Bos taurus GN=PSEN2 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14 Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 L+Y +D+ + Q+L +VLN L+ + +I +T LV+LY Y F+ ++ S+ +L +D T F+ ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P GPL++LVE A +E Sbjct: 120 LIYTPFSEDTPSVGQRLLNSVLNTLIMISVIVTMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 287
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_HUMAN (Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14 Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 L+Y +D+ + Q+L +VLN L+ + +I ++T LV+LY Y F+ ++ S+ +L +D T + ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P GPL++LVE A +E Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_PONAB (Presenilin-2 OS=Pongo abelii GN=PSEN2 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13 Identity = 49/169 (28.99%), Postives = 83/169 (49.11%), Query Frame = 1 Query: 100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 L+Y +D+ + Q+L +VLN L+ + +I +T LV+LY Y F+ ++ S+ +L +D T + ++NF VG++ + G P++L+QAY++ + +MA F K LPEW+ W P GPL++LVE A +E Sbjct: 119 LIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVAMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKG-PLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNE 286
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_CHICK (Presenilin-2 OS=Gallus gallus GN=PSEN2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13 Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = 1 Query: 100 LVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELA 582 L+Y +D+ + Q+L +VLN ++ + +I ++T LV+LY Y F+ ++ S+F +L +D T ++++NF VG++ + G P+ L+QAY++ + +M F K LPEW+ W P GPL++L E A Sbjct: 125 LIYTPFSEDTPSVGQRLLNSVLNTIIMISVIVVMTVFLVVLYKYRCYKFIHGWLILSSFMLLFLFTYIYLGEVLKTYNVAMDYPTVILIIWNFGAVGMIRIHWKG-PLQLQQAYLIMISALMVLVFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLXETA 287
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNB_DICDI (Presenilin-B OS=Dictyostelium discoideum GN=psenB PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 42/139 (30.22%), Postives = 65/139 (46.76%), Query Frame = 1 Query: 181 LIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 +I + T VLLY Y L ++ S +LG+ G P+D T L+FNFT+ G++ +F + Q Y+V + ++MA T+LP+WT + P GPLK+LVEL+ +E Sbjct: 234 MIIVTTVAFVLLYKYRCLKILYGWLFLSVGMMLGSFGTTFFQAMLSAANLPLDYITFAFLIFNFTVCGIIGVFWYAHQ-YVNQLYLVIISVLMAISLTRLPQWTIFTLLVIVAIYDLFAVLCPRGPLKVLVELSQERNE 371
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN_CAEEL (Presenilin sel-12 OS=Caenorhabditis elegans GN=sel-12 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 46/162 (28.40%), Postives = 74/162 (45.68%), Query Frame = 1 Query: 115 RPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R DS +K ++ NALV + ++ ++T LL++ Y Y F + ++ S+F +L A L N+ ++G++ + G P+ L+Q Y++ M +MA F K LPEWT W P GPL+ LVE A +E Sbjct: 89 RETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG-PLRLQQFYLITMSALMALVFIKYLPEWTVWFVLFVISVWDLVAVLTPKGPLRYLVETAQERNE 249 The following BLAST results are available for this feature:
BLAST of FC877965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877965 ID=FC877965; Name=FC877965; organism=Citrus clementina; type=EST; length=617bpback to top |