FC877987

Overview
NameFC877987
Unique NameFC877987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I   +Y SDEFRM+A+K+R C+R  SHDWT+CP+ H GE A+RRD
Sbjct:  225 IKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRD 269          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H37_ORYSJ (Zinc finger CCCH domain-containing protein 37 OS=Oryza sativa subsp. japonica GN=Os05g0525900 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 3
Query:  486 DGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            D E    DEF MY +K+RRC R RSHDWT CPYAH GE A+RRD
Sbjct:   50 DAEAEADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRD 93          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I   IY +DEFRMY++K+R C+R  SHDWT+CP+ H GE A+RRD
Sbjct:  252 IKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRD 296          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I   IY +DEFRM+++KIR C+R  SHDWT+CP+AH GE A+RRD
Sbjct:  248 IKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRD 292          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I+  +YGSDEFRMY++K++ C+R  SHDWT+C + H GE A+RRD
Sbjct:  202 INEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRD 246          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            Y SD+FRMY++K+R C+R  SHDWT+CP+ H GE A+RRD
Sbjct:  169 YASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRD 208          
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 24/45 (53.33%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617
            I+  +YG+D+FRM+++K++ C+R  SHDWT+CP+ H GE A+RRD
Sbjct:  205 INEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRD 249          
The following BLAST results are available for this feature:
BLAST of FC877987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
C3H50_ORYSJ7.765e-1260.00Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H37_ORYSJ7.765e-1265.91Zinc finger CCCH domain-containing protein 37 OS=O... [more]
C3H30_ARATH1.014e-1160.00Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H56_ARATH1.324e-1162.22Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H47_ARATH3.854e-1157.78Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H67_ORYSJ5.033e-1162.50Zinc finger CCCH domain-containing protein 67 OS=O... [more]
C3H29_ARATH6.573e-1153.33Zinc finger CCCH domain-containing protein 29 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877987 ID=FC877987; Name=FC877987; organism=Citrus clementina; type=EST; length=619bp
CTTCCTTTTGAAAACTCCCCTTAATTCATCTCTTCATTTCTCTTCATAAA
AAATGGATAGTTTCTCTCTTCCTTCATTTTCATTTATATATTTCCTTCCC
CAATTTTCATAATCTCCCGTAATTTTCTAGCCCTTTCTTGTTTGTTTCAG
CTTAAAAATATCAATCTTTGGCTCTCAAAATTTTCTTATTTATTTTTCTA
CATAATTTGCACATAATCCCTCTTCTCATGTATCAATTTTGAAATTTATC
AGGTCCTTTTCAAGATTCCAATTCATGCATAATTATTAACATTAAAATCT
TTCAGTTTTTGAAACCGTTGAAGCTTTTGTAAGTGGGTGCAATTTGTACA
TATCTATAAAAAAAAAATAGAAAAGACAAAAATATTCACTTTGAAAAAAA
AATGTTGAAAGACAGCAACAATGGTGTCCACGATTTCGCTGAGCATCCTT
ACTGCGACATAAATCTAAACCCTATTGAGGCAATCGACGGGGAAATCTAT
GGCTCTGATGAGTTCCGCATGTACGCGTACAAGATCAGACGGTGCACGAG
AACCCGGAGCCACGACTGGACGGACTGCCCCTACGCGCACCGTGGGGAGA
AGGCTCAGCGTCGGGACCC
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