FC877987
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I +Y SDEFRM+A+K+R C+R SHDWT+CP+ H GE A+RRD Sbjct: 225 IKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRD 269
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H37_ORYSJ (Zinc finger CCCH domain-containing protein 37 OS=Oryza sativa subsp. japonica GN=Os05g0525900 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12 Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 3 Query: 486 DGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 D E DEF MY +K+RRC R RSHDWT CPYAH GE A+RRD Sbjct: 50 DAEAEADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRD 93
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I IY +DEFRMY++K+R C+R SHDWT+CP+ H GE A+RRD Sbjct: 252 IKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRD 296
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I IY +DEFRM+++KIR C+R SHDWT+CP+AH GE A+RRD Sbjct: 248 IKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRD 292
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11 Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I+ +YGSDEFRMY++K++ C+R SHDWT+C + H GE A+RRD Sbjct: 202 INEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRD 246
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11 Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 3 Query: 498 YGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 Y SD+FRMY++K+R C+R SHDWT+CP+ H GE A+RRD Sbjct: 169 YASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRD 208
BLAST of FC877987 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11 Identity = 24/45 (53.33%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 483 IDGEIYGSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRD 617 I+ +YG+D+FRM+++K++ C+R SHDWT+CP+ H GE A+RRD Sbjct: 205 INEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRD 249 The following BLAST results are available for this feature:
BLAST of FC877987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877987 ID=FC877987; Name=FC877987; organism=Citrus clementina; type=EST; length=619bpback to top |