FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6986 contig Ccv1_Contig6986:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PARUW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Protochlamydia amoebophila (strain UWE25) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 77/194 (39.69%), Postives = 111/194 (57.22%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            SA EI  Q   G++S+ A+T  +  R A   Q           QA+ +AK LD+   L  +P+G L G+PI+IKD   VKG+ +T G  +F+ +  +   + ++E LL  GAVI  KTN+ +  M   ++N+   +T NP N   T GGSSGG  A VA + SPL +G+D  GS+R+P+  CG  GF+PT  RV
Sbjct:    5 SAIEIRDQFIRGDVSASAITQHYLNRIAKYDQKIGAFLSVYEEQAMMQAKQLDQK-RLANQPLGKLAGIPIAIKDNILVKGEISTCGS-KFLTNFKSPYQASVIEYLLAEGAVIIGKTNMDEFAMGSSTENSALQKTSNPWNLKCTPGGSSGGSAAAVAGRLSPLSLGSDTGGSVRLPASFCGVVGFKPTYGRV 196          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9605) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.765e-24
Identity = 68/188 (36.17%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  315 RQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +QL++GE+SS  +     KR   ++   +   E    QA   A  +DE     G+ +GPL GLP++IKD    KG +TT      ++       S + E L + G V+  KTN+ +  M G ++ + FG T NP NT+   GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:   13 QQLQSGEVSSRELVDQHLKRLESSEPSLNAFVEVTADQARAEASRIDE-ARAAGEALGPLAGLPLAIKDNLCTKGVRTTCSS-RMLEQFVPPYESTVTERLWQAGGVLVGKTNLDEFAMGGSTETSAFGATQNPWNTAHVPGGSSGGSAAAVAAGSCVASLGSDTGGSIRQPASFCGVVGLKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THEFY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermobifida fusca (strain YX) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.014e-23
Identity = 67/190 (35.26%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA E+   + +GE S++  T A+  R A               +ALE+A+ +D      G+ +GPL G+P++ KD F  K   TTA   + ++   +  ++ + E L + G VI  KTN+ +  M   ++N+ +G T NP +T    GGSSGG  A VA   +PL  GTD  GSIR P+  CG  G +PT
Sbjct:    8 SAAELGAAIASGETSAVEATQAYLDRIAEVDGQIHAFLHVAADKALEQARAVDAR-RAAGEKLGPLAGVPVAHKDVFTTKDMPTTAAS-KILEGWQSPYDATVTERLRDAGLVILGKTNLDEFAMGSSTENSAYGPTRNPWDTDRVPGGSSGGSSAAVAAFEAPLATGTDTGGSIRQPAAVCGLVGAKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: Y1954_ARCFU (Putative amidase AF_1954 OS=Archaeoglobus fulgidus GN=AF_1954 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 73/194 (37.63%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRVP 881
            A +I  +LK GE+    +     ++        +    T+  +A+E AK  D           PL GLPI+IKD  + +G +TT    +F ++    E++ LVE L + GAVI  KTN+P+  +   +DN +FG T NP + S T GGSSGG  A VA    P+  G D  GSIRIP+  CG YG +P+  RVP
Sbjct:    4 AVDIVEKLKGGEIKPAELVEECLEKIERLNPKINAFV-TLNEKAIEEAKKADVST--------PLAGLPIAIKDNVETRGIRTTY-CSKFYENYVPEEDAVLVERLKKAGAVIIGKTNMPEFGLIAYTDNPMFGPTRNPWDLSRTVGGSSGGSAAAVAAGILPVASGNDGGGSIRIPASFCGLYGLKPSFGRVP 187          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_RHOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodopirellula baltica GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23
Identity = 67/195 (34.36%), Postives = 103/195 (52.82%), Query Frame = 3
Query:  294 NSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +SA+EI +QL +GE++++ V          +Q   +  T      A++ A+ +D   +  GK +GPL GLP++IKD        TT    + ++      ++ +V  L   GA++  KTN+ +  M   ++ +  G T NP +T+ T GGSSGG  A VA    PL +GTD  GSIR P+  CG  G +PT  RV
Sbjct:    3 HSASEILKQLDSGEVTAVEVIAQSLAAIRASQPTINAFTHVAEETAMQAAEAVDADRKA-GKTLGPLAGLPVAIKDVLCTSDMPTTCSS-KMLEGFVPPYDATVVARLKSAGAIVVGKTNMDEFAMGASTETSAMGVTGNPWDTTKTPGGSSGGAAAAVAAGAVPLSLGTDTGGSIRQPAAFCGITGLKPTYGRV 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_STRAW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces avermitilis GN=gatA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22
Identity = 69/201 (34.33%), Postives = 107/201 (53.23%), Query Frame = 3
Query:  282 ITETN------SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            +T+TN      +A EIA ++ +GEL+++ VT A   R     +            AL +A+ +DE  E  G+ +GPL G+P+++KD F  +G  TT G  + ++      ++ L + L     VI  KTN+ +  M   ++N+ +G T NP + S   GGS GG  A +A   +PL +GTD  GSIR P+   GT G +PT
Sbjct:    1 MTDTNVNIIRLTAAEIAAKVASGELTAVQVTEAHLARIDAVDEKVHAFLHVDREGALAQARAVDEKRE-RGEKLGPLAGVPLALKDIFTTEGIPTTVGS-KILEGWIPPYDATLTKKLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLSRIPGGSGGGSSAALASFEAPLAIGTDTGGSIRQPAAVTGTVGVKPT 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: FAH2B_DANRE (Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=faah2b PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYL--ELHGKPV----GPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T SA ++A +++ GE+SS+ V  A+  R      L + L +  FS AL  A   D+ +  E  G+ V     PL G+P+S+K+ F ++G   + G     K  A+ + +  V +L   GA+    TN  +  M  +S+N+++G T NP+N     GGSSGGEG+++    S  G+G+D+ GSIR+P    G +G +P+
Sbjct:   47 TLSAVQLAEKIRRGEVSSVEVVQAYIDRIQEVNPLLNALIKDRFSAALLEAARADKLIKEENGGEEVLRNQFPLLGVPMSVKESFGLQGMPNSGGLKSRGKVLASVD-APPVALLKRAGAIPLGVTNTSELCMWMESNNHLYGITSNPYNLERICGGSSGGEGSIIGGGASVFGIGSDIGGSIRMPCFFNGIFGHKPS 243          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DESDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.564e-22
Identity = 72/195 (36.92%), Postives = 98/195 (50.26%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVG-PLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S T +A+ L+  ELS++ VTTA   R    +   + L       AL RA  LD      G     PL G+P+++KD F  +G  TTAG    ++      ++  V+ L E GAVI  KTN+ +  M   ++N+ F  T NP N +   GGSSGG  A V        +GTD  GSIR P+  CG  G +PT  RV
Sbjct:    8 SLTAVAQALQKKELSAVDVTTACLDRITATEPHLAALLYVNAENALARATTLDS----EGPDAARPLWGVPVTLKDAFSTRGMPTTAGS-RMLEGYTPFYDAFAVQKLHEAGAVILGKTNLDEFAMGSSTENSAFKVTRNPWNLNKVPGGSSGGSAASVTAGQCFASLGTDTGGSIRQPASFCGCVGLKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_STRCO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces coelicolor GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.267e-22
Identity = 64/190 (33.68%), Postives = 102/190 (53.68%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            +A EIA ++ +GEL+++ VT A   R     +            AL +A+ +DE  E  G+ +GPL G+P+++KD F  +G  TT G  + ++      ++ + + L     VI  KTN+ +  M   ++N+ +G T NP + +   GGS GG  A +A   +PL +GTD  GSIR P+   GT G +PT
Sbjct:    8 TAAEIAAKIASGELTAVQVTEAHLARIEAVDEKVHAFLHVDREGALAQARAVDEKRE-RGEKLGPLAGVPLALKDIFTTEGIPTTVGS-KILEGWIPPYDATVTKRLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLTKIPGGSGGGSSAALAAFQAPLAIGTDTGGSIRQPASVTGTVGVKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SALTO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.267e-22
Identity = 66/190 (34.74%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA E+A  +  GE S++ VT A   R +                AL+ A+ +D      G+P+GPL G+P+++KD    KG  TTAG  + +       +S +V  L   G V+  KTN+ +  M   ++ + FG T NP + S   GGS GG  A +A   +PL +G+D  GSIR P    GT G +PT
Sbjct:    8 SAAELAGLVARGESSAVEVTQAHLDRISAVDDRVHAFLHVDTEGALDAARDVDSR-RAAGEPLGPLAGVPVAVKDVLTTKGVPTTAGS-KILADWRPPYDSTIVRRLRAAGTVMLGKTNMDEFAMGSSTEYSAFGPTHNPWDLSRIPGGSGGGSSAALAAYETPLSIGSDTGGSIRQPGAVTGTVGVKPT 195          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PARUW2.110e-2939.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_SYNSC7.765e-2436.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_THEFY1.014e-2335.26Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
Y1954_ARCFU2.259e-2337.63Putative amidase AF_1954 OS=Archaeoglobus fulgidus... [more]
GATA_RHOBA8.585e-2334.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_STRAW1.121e-2234.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
FAH2B_DANRE2.498e-2233.84Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=f... [more]
GATA_DESDA5.564e-2236.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_STRCO7.267e-2233.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SALTO7.267e-2234.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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