FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CHLFF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydophila felis (strain Fe/C-56) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            SA E+   + +GE S+ A+   F  R                 +A E+A  +D   E  G+P+G L G+PI IKD   V G +TT        + A  + + +  I  E G +I  K N+ +  M   +  + F  T NP + S   GGSSGG  A V+ +  P+ +G+D  GSIR P+  CG  GF+P+
Sbjct:    5 SALELRNSVVSGESSATAIAEYFYNRIETEDSRIGAFLSLCKERAYEKAAIVDAKRE-RGEPLGKLAGVPIGIKDNIHVTGLRTTCASKMLENYIAPFDATVIKRIEAEDG-IILGKLNMDEFAMGSTTQYSAFHPTKNPWDLSCVPGGSSGGSAAAVSARFCPMALGSDTGGSIRQPAAFCGVVGFKPS 192          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNY3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 3
Query:  315 RQLKTGELSSLAVTTA-FAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            +QL   E+S++AV  A  A+  A+  +L S L  T   QA+ +A+ +D  +   G+P+G L G+PI IKD    KG  TT    + ++       S + E L + GAV+  KTN+ +  M   ++N+ +  T NP + +   GGSSGG  A VA     + +G+D  GSIR P+  CG  G +PT
Sbjct:    9 QQLIDQEISAVAVAQASLARIEAVDDRLKSFLQVTA-PQAIAQAEKVDAQIAA-GEPIGLLAGIPIGIKDNLCTKGIVTTCAS-QILRGFVPPYESTVTEKLQKAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLTRVPGGSSGGSAAAVAADECLIALGSDTGGSIRQPASLCGVVGMKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH8102) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 61/188 (32.45%), Postives = 93/188 (49.47%), Query Frame = 3
Query:  315 RQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            ++L+ G +SS  +     +R   ++   +   E    +A   A  +D+     G+ +GPL GLP++IKD    +G +TT      ++       S + + L   GAV+  KTN+ +  M G ++ + FG T NP N     GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    8 QRLQAGGVSSRELVDEHLQRLEQSEPSLNAFVEVTAERARADADRVDQ-ARAAGEDLGPLAGLPLAIKDNLCTRGVRTTCSS-RMLEQFVPPYESTVTDRLWGAGAVLVGKTNLDEFAMGGSTETSAFGATKNPWNIEHVPGGSSGGSAAAVASGSCLASLGSDTGGSIRQPASFCGVVGLKPTYGRV 193          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNJB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 63/185 (34.05%), Postives = 98/185 (52.97%), Query Frame = 3
Query:  315 RQLKTGELSSLAVTTAFAKRAA-IAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            RQL T E S+  +   + +R A +  QL S +T T    AL++A+ +D  +   G+ +GPL G+P+++KD    +G +TT      ++       S +   L   G V   KTN+ +  M   ++N+ F RT NP + +   GGSSGG  A VA   + + +G+D  GSIR P+  CG  G +PT
Sbjct:    9 RQLVTKERSAEEIAREYLERLAQLEPQLKSFITVTE-ELALQQARAVDARIRA-GEAIGPLAGIPLAVKDNLCTQGIRTTCAS-RMLEGFIPPYESTVTARLAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_SYNAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophus aciditrophicus (strain SB) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 62/192 (32.29%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  306 EIARQLKTGELSSLA-VTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+  +++ G ++S A V + F +  A+ + + S +T  M   ALE A+  DE  ++    +  L G+P+++KD +  +G +TT G +  + +     ++ +V  L E GAV   KTN+ +  M   ++ + +G T NP +     GGSSGG  A VA       +G+D  GSIR P+  CG  G +PT  RV
Sbjct:   10 ELQNKIRQGGVTSTAIVNSVFGRIDAVEENVHSYIT-LMRESALEEAQKADE--QIRTGEINALTGIPVALKDIYCTRGVRTTCGSL-ILDNFIPPYDATVVVKLREAGAVFTGKTNMDEFAMGSSTETSYYGFTRNPWDLERIPGGSSGGSAAAVAADECIAALGSDTGGSIRQPAALCGVVGMKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PELCD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 65/191 (34.03%), Postives = 89/191 (46.60%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+   LK  E+SS  +T AF  R A   Q            AL+ A+  D  L         L G+P+++KD F  +G +TT      + +     +   V  L E  AVI  K N+ +  M   ++N+ FG   NP N     GGSSGG  A VA + +   +GTD  GSIR P+  CG  G +PT  RV
Sbjct:   10 ELQALLKNREISSRELTQAFLTRIADTDQRIGAFITQSEEAALKNAEAADARLAAGN--AASLTGIPLALKDIFITEGMRTTCAS-RILDNFVPPYSGTAVRKLQEQDAVILGKLNMDEFAMGSSNENSAFGTVKNPWNQDCVPGGSSGGSAACVAARQAVATLGTDTGGSIRQPASHCGVVGLKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_NEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neorickettsia sennetsu (strain Miyayama) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 66/197 (33.50%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNP----HNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADR 875
            S  ++   L   E+SSL +  A   +       T+ L      +A +RAK  DE L+  G+ V  L G+P  IKD +  KG +TTA     +++   T  S +   L++ GAV+  K N+ +  M   + ++ FG   NP        L  GGSSGG  A VA   SP  +G+D  GS+R P+  CG  G +PT  R
Sbjct:    8 SVAKMHLALARREISSLELVEAHLLQIRERNAHTNALILVTEEEARQRAKLADERLK-RGESVNTLTGIPCVIKDMYCTKGVRTTAAS-RALRNFVPTYESTVTSKLIDAGAVMLGKANMDEFAMGSSNTSSFFGPVKNPLKGKKGVDLVPGGSSGGSAAAVADYYSPFSLGSDTGGSVRQPASFCGLVGLRPTYGR 202          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_MYCA9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            A  +A  + +GE+SS+ VT A   + A   +           QAL  AK +D+ +     P G L G+P+++KD F  +   TT G  + +++     ++ +   L   G  I  KTN+ +  M   ++N+ +G T NP +     GGS GG  A +A   +PL +GTD  GSIR P+    T G +PT
Sbjct:    9 AAALAALIHSGEVSSVEVTRAHLDQIASTDETYRAFLHVAGEQALAAAKDVDDAIAAGSVPSG-LAGVPLALKDVFTTRDMPTTCGS-KILENWVPPYDATVTARLRGAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDVERVPGGSGGGSAAALAAFQAPLAIGTDTGGSIRQPAALTATVGVKPT 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DEIRA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus radiodurans GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 63/194 (32.47%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +A ++AR +++GE +   +      RA   + L + ++  + S A E+A  +   ++  G+ + PL G+PI +KD   V G +TT G    + +  +   +   + L   GAVI  K N+ +  M   ++++  G TLNP +     GGSSGG    VA   SP+ +G+D  GS+R P+  CG YGF+PT  RV
Sbjct:    6 TAAQLARAVQSGETTPQQLLHGALARAEAVRGLNALVS--LNSHAEEQAAAVQGRMQA-GETL-PLAGVPIVVKDNINVTGTRTTCGS-RMLANYVSPYTATAAQKLQGAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDHERVPGGSSGGSAVAVAAGISPVSLGSDTGGSVRQPAALCGVYGFKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia sp. (strain 383) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.758e-19
Identity = 67/194 (34.54%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D   EL     G L GLPI+ KD F  +G  +TAG  + + +  +  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +T+   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALAAKECSAVELAQLYLKRIEAARDLNA-FVHVDADLTLAQAKAADA--ELARGAGGALTGLPIAHKDVFVTRGWHSTAGS-KMLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CHLFF4.409e-1932.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNY35.758e-1935.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNPX5.758e-1932.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNJB5.758e-1934.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNAS5.758e-1932.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PELCD5.758e-1934.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NEOSM5.758e-1933.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MYCA95.758e-1931.75Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEIRA5.758e-1932.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_BURS35.758e-1934.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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