FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BURCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain AU 1054) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.521e-19
Identity = 67/194 (34.54%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S TE+   L   E S++ +   + KR   A+ L +          L +AK  D   EL     G L GLPI+ KD F  +G ++TAG  + + +  +  ++ +V  L   G V   KTN+ +  M   ++N+ FG   NP +T+   GGSSGG  A VA + +P   GTD  GSIR P+   G  G +PT  RV
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDLNA-FVHVDADLTLAQAKAADA--ELARGAGGALTGLPIAHKDVFVTRGWRSTAGS-KMLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRV 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_KINRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQ--------ALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            A  ++  L+ GE+S+  VT A   R       TS   ET            AL RA+ +D      G  +GPL G+PI +KD    KG  TTAG    ++      ++ +V  L   G V+  KTN+ +  M   ++++ +G T NP + +   GGS GG  A +A   +PL +G+D  GSIR P+   GT G +PT
Sbjct:   13 AARLSEALRAGEVSAEEVTRAHLDRIDAVDGPTSGAGETGVHAFLHVDHEGALARARQIDAD-RAAGAELGPLAGVPIGVKDVLTTKGLPTTAGS-RMLQGWVPPYDATVVRELHAAGLVVLGKTNMDEFAMGSTTEHSAYGVTRNPWDPTRIPGGSGGGSAAALAAFEAPLTIGSDTGGSIRQPAAVTGTVGVKPT 207          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_GEOSW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus sp. (strain WCH70) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 66/193 (34.20%), Postives = 98/193 (50.78%), Query Frame = 3
Query:  303 TEIARQLKTGELS-SLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +E+   L+  E+S S  V  +F +   + +Q+ + LT      A  +AK LD+ L   G   G L G+PI IKD    KG +TT    + + +     ++ ++E L E GA+   K N+ +  M   ++N+ F  T NP +     GGSSGG  A VA    P  +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    9 SELHTLLQKKEISVSDLVDESFRRIGEVEEQVQAFLTLNE-ENARAKAKELDDKLAKEGNDFGVLFGMPIGIKDNIVTKGLRTTCAS-KILYNFDPIYDATVMERLNEAGAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRV 199          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_GEOSL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sulfurreducens GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+  +L   E+SS+  T A   R        +        +AL  A+  D  +   G  + PL G+P+++KD F  +G +TT G  + + +     +  +V  L E GAVI  K N  +  M    +++ FG T NP N +   GGSS G  A +A + +   +GTD  GSIR P+  CG  G +PT  RV
Sbjct:   10 ELHDKLAKREVSSVEATRALLARIEATDSRVNAYITVTPDEALAAAEAADRRIAAGG--LTPLTGVPVALKDIFVTRGIRTTCGS-KILGNFIPPYDGTVVAKLREAGAVIVGKLNQDEFAMGSSGESSAFGATKNPWNLACIPGGSSSGSAAAIAARSATATLGTDTGGSIRQPASHCGCVGLRPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 66/192 (34.38%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  306 EIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            E+  +LK  ELSS+  T A   R  A+  ++ + +T T   +AL  A+  D    +    + PL G+P+++KD F  KG +TT    + + +     +   V  L E GAVI  K N  +  M    +++ FG T NP N     GGSS G  A +A + +   +GTD  GSIR P+  CG  G +PT  RV
Sbjct:   10 ELHDRLKRKELSSVEATRAMLARIEAVDPKVNAYITVTP-EEALAAAEAADR--RIAAGDMAPLTGIPVALKDIFVTKGIRTTCAS-KILDNFVPPYDGTAVAKLKEAGAVIVGKLNQDEFAMGSSGESSAFGPTRNPWNLECIPGGSSSGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLRPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CLOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 64/193 (33.16%), Postives = 92/193 (47.67%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            A E+   +   E S   VT A  +      +  +        +AL  AK LDE L   G+ +G L G P+ IKD   VK  Q T    + ++   +  ++ + E +   G VI  K N+ +  M   ++N+ +  T NP +     GGSSGG  A VA K  PL +GTD  GS+R P+  CG  G +PT  RV
Sbjct:    8 AHELKNLISKKEASVEEVTKAHLENVKNIDEKVNAFLYIAEEEALNDAKALDEKLS-KGEDIGLLGGAPLGIKDNISVKNMQNTCAS-KILEGYISPYDATVSESVKSQGGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTGGSVRQPASFCGIVGLKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 61/190 (32.11%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            S  E+  QL   E S++ +T          +            QALE+A+ +D  +   G+ +G L G+PI +KD    KG  TT      +++      S + + LL+ GAV+  KTN+ +  M   ++N+ +  T NP + S   GGSSGG  A VA +   + +G+D  GSIR P+  CG  G +PT
Sbjct:    3 SIRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVDAKIAA-GEEIGLLAGIPIGVKDNMCTKGIPTTCAS-RILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 61/190 (32.11%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            S  E+  QL   E S++ +T          +            QALE+A+ +D  +   G+ +G L G+PI +KD    KG  TT      +++      S + + LL+ GAV+  KTN+ +  M   ++N+ +  T NP + S   GGSSGG  A VA +   + +G+D  GSIR P+  CG  G +PT
Sbjct:    3 SIRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVDAKIAA-GEEIGLLAGIPIGVKDNMCTKGIPTTCAS-RILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DESPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotalea psychrophila GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 65/194 (33.51%), Postives = 92/194 (47.42%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S  E A +L+ G++SS+ +T +  +R    +             AL +AK  D+ L+       PL G+P+SIKD   VK    T G  + ++   A  N+ +V+ L   GAV   K  + +  M   S+   FG   NP      AGGSSGG    VA +     +GTD  GSIR P+  CG  G +PT  RV
Sbjct:    7 SIEEAAAKLRAGDISSVELTQSCLQRIGDVEDRVKGFITVDEEGALAQAKAADKALQ--NGETNPLCGIPMSIKDLLAVKDLPMTCGS-KMLEKFIAPYNATIVDKLQGAGAVNLGKVTMDEFAMGSTSETCAFGVPQNPWKEGYVAGGSSGGSAVTVAAQECFFSIGTDTGGSIRQPAALCGVVGMKPTYGRV 197          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_DESAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 64/186 (34.41%), Postives = 93/186 (50.00%), Query Frame = 3
Query:  321 LKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            L +GE+SS  +TT    R                + ALE A   DE +   G+   PL G+P+++KD     G +TT    + +++   T ++  V +L + GAVI  KTN+ +  M   ++N+ F  T NP N     GGSSGG  A VA +     +GTD  GSIR P+  CG  G +P+  RV
Sbjct:   15 LLSGEISSKDLTTCLLDRIKTHDADLGAFITVDAAGALEAATAADERIA-RGEDA-PLLGIPLALKDLLCTSGVRTTCAS-KILENFVPTYDATAVTLLKQAGAVIVGKTNLDEFGMGSSTENSAFHLTRNPWNLDHVPGGSSGGSAAAVAARMCTAALGTDTGGSIRQPASHCGVVGLKPSYGRV 197          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURCA7.521e-1934.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_KINRD9.822e-1933.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=K... [more]
GATA_GEOSW9.822e-1934.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_GEOSL9.822e-1932.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_GEOMG9.822e-1934.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_CLOBB9.822e-1933.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ANAVT9.822e-1932.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANASP9.822e-1932.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_DESPS1.283e-1833.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DESAH1.283e-1834.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
back to top