FC877989

Overview
NameFC877989
Unique NameFC877989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_MOOTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moorella thermoacetica (strain ATCC 39073) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 67/195 (34.36%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +A E++  L   E+SS   T A   R  A+  ++ + LT T   QALE A+ +D      G+ +GPL G+P+++KD    +G +TT      +       ++ +V  L E GAV+  K N+ +  M   ++N+ F  T NP +     GGSSGG  A VA   +   +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    7 TAHELSDLLNRKEISSEEATAAIIDRIEAVDGRVQAYLTRTA-EQALEEARAVDA-ARARGETLGPLAGVPMALKDNLCTEGVRTTCSS-RMLADWVPPYDATVVRRLKEAGAVMLGKLNMDEFAMGSSTENSSFFPTRNPWDLERVPGGSSGGAVAAVAAGEAYFALGSDTGGSIRQPASFCGVVGMKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_BACST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus stearothermophilus GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 63/195 (32.31%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  294 NSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +S +E+   L+  E+S   +     +R    ++           QA  +AK LD+ L   G+   PL GLPI IKD    KG +TT   ++ + +     ++ ++E L   GA+   K N+ +  M   ++N+ F  T NP +     GGSSGG  A VA    P  +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    6 HSVSELHTLLQKKEVSISDLVDESYRRIGEVEEKVQAFLTLNEEQARAKAKELDDQLA-KGEETNPLFGLPIGIKDNIVTKGLRTTCA-IKILYNFDPIYDATVMERLNAAGAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLKRVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_THICR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 66/193 (34.20%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T S  E++ +L+  E++S+A+T  +  R      +L + +T T    A+E A+  DE +   GK  G L G+P++ KD F     +TT G  + + +  A  ++ +VE    LG  I  KTN+ +  M   S+++ +G T NP +     GGSSGG  A++A   +PL  G+D  GSIR P+  CG  G +PT
Sbjct:    3 TLSVKEMSEKLRNKEITSVALTQHYLDRIDQYDGELNAYVTVTP-ELAMEMARQADEMIA-EGKG-GLLTGIPVAHKDIFCTLDVKTTCGS-KMLDNFIAPYDAKVVEASRALGMPILGKTNMDEFAMGSSSESSYYGATKNPWDLKAVPGGSSGGSAAVIAAGLAPLATGSDTGGSIRQPASFCGITGIKPT 191          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PROA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 58/195 (29.74%), Postives = 103/195 (52.82%), Query Frame = 3
Query:  294 NSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            +S  ++  +L   E+S  AV TA+ +R    +     ++   + +AL +A+ LD  L+  G+  G L G+P++IKD   ++G   T    + + +  A  ++ ++  L E  AV   K N+ +  M   ++N+ FG   NP++++   GGSSGG  A VA   + + +G+D  GS+R P+  C   G +PT  R+
Sbjct:    4 SSYRDLREKLLAREMSCEAVVTAYLQRIEATRDRNIYIS-VFYDEALRQARSLDRKLDA-GETPGKLFGMPMAIKDNISIEGTGLTCAS-KILSNYTAVYDATVIRRLKEEDAVFLGKVNMDEFAMGSSNENSSFGPVPNPYDSTKVPGGSSGGSAAAVAGDLALVALGSDTGGSVRQPAGFCNVVGLKPTYGRI 195          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_PERMH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 61/194 (31.44%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S  E+   ++  E+    V  +FA+R    +         +  QA+ERAK LDE +    + +  L G+PI+IKD    +G +TT    + +++     ++ +++ L +   VI  KTN+ +  M   ++N+ F  T NP +     GGSSGG  A V+   +P  +G+D  GSIR P+  CG  G +PT  RV
Sbjct:    7 SIKELKELIEKKEVKPSEVIESFAQRTKDVEVKIKSYVTDLTEQAVERAKQLDEKISDLSE-IPELFGIPIAIKDNISTEGIRTTCSS-KILENYVPPFDATVIKRLKDKEYVITGKTNLDEFAMGSSTENSAFFVTRNPWDLDRVPGGSSGGSAAAVSAGLAPAALGSDTGGSIRQPAAFCGVIGLKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_NOSP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            S  E+ +QL   E S++ +T    +R  A+  +L S L  T   +ALE+A  +D  +   G+ +G L G+P+ IKD    KG  TT      +++      S   + L + GAV+  KTN+ +  M   ++N+ +  T NP N S   GGSSGG  A V+ +   + +G+D  GSIR P+  CG  G +PT
Sbjct:    3 SIRELHQQLVKKERSAVEITQEALERIEALEPKLHSFLCVTA-ERALEQAGAVDAKIAA-GEEIGLLAGIPVGIKDNLCTKGIPTTCAS-RILENFVPPYESTATQKLADAGAVMVGKTNLDEFAMGSSTENSAYQVTANPWNLSRVPGGSSGGSAAAVSSQECVVALGSDTGGSIRQPASFCGVVGMKPT 190          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T +A E+   L   E+S+  +    A R    +            +ALE+A  +D  +   G+ +GPL G+P++IKD     G +TT    + + +     ++ +V  L E GAV+  KTN+ +  M   ++N+ F  T NP +     GGSSGG  A VA   +   +G+D  GSIR P+  CG  G +PT
Sbjct:    5 TKTAHELHDLLVRKEVSATEIVKTQADRMQALEPKIRAFVTLTVDKALEQAARVDAKIAA-GEAIGPLEGIPMAIKDNMCTDGVRTTCSS-KILNNFVPPYDATVVTKLKEAGAVMMGKTNLDEFAMGSSTENSGFFATCNPWDIERVPGGSSGGSAASVAAGQAVFSLGSDTGGSIRQPAAFCGVVGLKPT 194          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CORJK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium jeikeium (strain K411) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 59/192 (30.73%), Postives = 92/192 (47.92%), Query Frame = 3
Query:  291 TNSATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPT 866
            T +A E+A ++   E+SS  VT A   R                 +AL  A  +D+ L    +P   L G+P+++KD F      TT    + ++   +  ++ +   L   G  I  KTN+ +  M   ++N+ +G T NP++   T GGS GG  A +A   +PL +GTD  GSIR P+    T G +PT
Sbjct:   18 TWTAAELAEKIHAREISSQEVTQAHLDRIGEIDGDIHAFLHVGADEALAAASNVDDALAAGDQPTSKLAGVPLALKDVFTTTDAPTTCAS-KMLEGYMSPYDATVTMRLRAAGIPILGKTNMDEFAMGSSTENSAYGATKNPYDLERTPGGSGGGSSAALAAGMAPLAIGTDTGGSIRQPAALTNTVGVKPT 208          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_CLOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 64/193 (33.16%), Postives = 92/193 (47.67%), Query Frame = 3
Query:  300 ATEIARQLKTGELSSLAVTTAFAKRAAIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            A E+   +   E+S   VT A  +         +        +AL  AK LDE L   G+ +G L G P+ IKD   VK  Q T    + ++   +  ++ + E +   G VI  K N+ +  M   ++N+ +  T NP +     GGSSGG  A VA K  PL +GTD  GS+R P+  CG  G +PT  RV
Sbjct:    8 AHELKDLISKKEVSVEEVTKAHLENVKNIDAKVNAFLYIAEEEALNDAKALDEKLS-KGEDIGLLGGAPLGIKDNISVKNMQNTCAS-KILEGYISPYDATVSESVKSQGGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTGGSVRQPASFCGIVGLKPTYGRV 198          
BLAST of FC877989 vs. ExPASy Swiss-Prot
Match: GATA_ACIAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter sp. (strain ADP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 70/195 (35.90%), Postives = 96/195 (49.23%), Query Frame = 3
Query:  297 SATEIARQLKTGELSSLAVTTAFAKRA-AIAQQLTSCLTETMFSQALERAKYLDEYLELHGKPVGPLHGLPISIKDCFQVKGKQTTAGFVEFIKHPAATENSCLVEILLELGAVIYVKTNIPQTMMTGDSDNNIFGRTLNPHNTSLTAGGSSGGEGALVAFKGSPLGVGTDVAGSIRIPSLCCGTYGFQPTADRV 878
            S  E+A  L   + SS  +T  +  R   I  Q+ S +T T   QAL +A   D   +      G L G+P++ KD F  KG +TTAG  + + +  +  N+ +VE     G V   K N+ +  M   S+++ FG T NP       GGSSGG  A VA   +P   GTD  GSIR P+  CG  G +PT  RV
Sbjct:    8 SVRELAEGLGQAQFSSRELTQHYLNRIDKIDAQVKSYVTVT-HEQALAQADAADALRQAGN--AGFLTGVPLAHKDIFCTKGIKTTAGS-KMLDNFISPYNATVVEKANAAGLVTLGKLNMDEFAMGSTSESSYFGATCNPWALDRVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRV 198          
The following BLAST results are available for this feature:
BLAST of FC877989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MOOTA1.675e-1834.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BACST1.675e-1832.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_THICR2.188e-1834.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PROA22.188e-1829.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PERMH2.188e-1831.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NOSP72.188e-1834.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_HELMI2.188e-1831.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CORJK2.188e-1830.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBA2.188e-1833.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ACIAD2.188e-1835.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877989 ID=FC877989; Name=FC877989; organism=Citrus clementina; type=EST; length=905bp
TCTCCAGTATTCGTTACAACTTCTGAGCTCTCCTGACGATCCCACGTCCC
CGTTTACCCGCACGAATAGCAAGCGATCATTTACAAAACGCAATGCACGG
AAGCGACACCGACACGTGGGATAAGCTTGTAGCACTGAAACAGAAGCAGA
TCGCTGAGGATATCCCACTGGAATGGCGCTTGCCATCGTCTCTGGTCGAA
AAATATCGCAAGCCCGGCGTCAATCTCATTGCAAGTGACGTCTTGAAACA
TGCTGGTATCTTGTCGAGTGTCGAGCTGCAGATCACCGAGACCAACTCAG
CGACGGAGATAGCTCGCCAGCTGAAGACAGGCGAGTTGAGTTCGCTTGCA
GTCACAACCGCTTTCGCGAAGCGGGCGGCAATTGCTCAACAATTGACATC
ATGCTTGACAGAAACCATGTTTTCGCAAGCTCTAGAACGAGCCAAGTATC
TCGATGAGTACCTAGAGCTTCACGGCAAACCCGTGGGTCCTCTACATGGC
TTGCCCATTAGTATCAAAGACTGTTTCCAGGTGAAAGGCAAGCAGACGAC
GGCCGGCTTTGTCGAGTTCATCAAGCATCCAGCAGCAACTGAAAACTCAT
GTCTCGTGGAGATCCTTTTGGAGCTTGGTGCAGTGATCTACGTCAAGACT
AACATTCCTCAAACTATGATGACTGGTGACTCGGACAACAATATTTTTGG
ACGCACACTAAACCCGCACAACACAAGCCTGACTGCTGGCGGCTCCAGCG
GCGGAGAAGGAGCACTGGTTGCTTTCAAAGGTTCTCCGCTCGGCGTAGGC
ACAGATGTGGCAGGTTCCATCCGCATACCCTCGTTGTGCTGCGGAACATA
TGGCTTTCAACCGACCGCGGACCGCGTGCCCTACGGGTGGCAGATAACTG
GCGAC
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